This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481234 (65 seq.)
>W131222608
AUBK01000005
Actinomycetota
Actinotignum schaalii DSM 15541 [AUBK]
5387
5314
-
Gly
CCC
[ENA]
¡û
>W1711772090
MVGS01000077
Actinomycetota
Trueperella pyogenes [MVGS]
5576
5503
-
Gly
CCC
[ENA]
¡û
>WENV180697895
ODDE01009510
[ODDE] human metagenome; G_DNA_Supragingival plaque
300
228
-
Gly
CCC
[ENA]
¢þ
>WENV180726560
ODGU01000111
[ODGU] human metagenome; G_DNA_Supragingival plaque
55842
55770
-
Gly
CCC
[ENA]
¢þ
>WENV180733508
ODGZ01000137
[ODGZ] human metagenome; G_DNA_Supragingival plaque
48744
48672
-
Gly
CCC
[ENA]
¢þ
>WENV180735561
ODHB01000029
[ODHB] human metagenome; G_DNA_Supragingival plaque
61673
61601
-
Gly
CCC
[ENA]
¢þ
>WENV180735946
ODHB01002105
[ODHB] human metagenome; G_DNA_Supragingival plaque
4625
4554
-
Gly
CCC
[ENA]
¢þ
>WENV180739061
ODHD01003968
[ODHD] human metagenome; G_DNA_Supragingival plaque
2705
2777
+
Gly
CCC
[ENA]
¢þ
>WENV180755050
ODHU01009788
[ODHU] human metagenome; G_DNA_Supragingival plaque
967
1038
+
Gly
CCC
[ENA]
¢þ
>WENV180783058
ODIQ01001193
[ODIQ] human metagenome; G_DNA_Tongue dorsum
8357
8430
+
Gly
CCC
[ENA]
¢þ
>WENV180783064
ODIQ01001233
[ODIQ] human metagenome; G_DNA_Tongue dorsum
11668
11740
+
Gly
CCC
[ENA]
¢þ
>WENV180783448
ODIQ01007031
[ODIQ] human metagenome; G_DNA_Tongue dorsum
640
567
-
Gly
CCC
[ENA]
¢þ
>WENV180795949
ODJB01000684
[ODJB] human metagenome; G_DNA_Supragingival plaque
17829
17757
-
Gly
CCC
[ENA]
¢þ
>WENV180796354
ODJB01003644
[ODJB] human metagenome; G_DNA_Supragingival plaque
3186
3259
+
Gly
CCC
[ENA]
¢þ
>WENV180801146
ODJD01009781
[ODJD] human metagenome; G_DNA_Supragingival plaque
235
308
+
Gly
CCC
[ENA]
¢þ
>WENV180820522
ODJR01010447
[ODJR] human metagenome; G_DNA_Tongue dorsum
3
76
+
Gly
CCC
[ENA]
¢þ
>WENV180830216
ODKB01000878
[ODKB] human metagenome; G_DNA_Tongue dorsum
12553
12626
+
Gly
CCC
[ENA]
¢þ
>WENV180830245
ODKB01001116
[ODKB] human metagenome; G_DNA_Tongue dorsum
6277
6350
+
Gly
CCC
[ENA]
¢þ
>WENV180897597
ODNI01043571
[ODNI] human metagenome; G_DNA_Tongue dorsum
572
500
-
Gly
CCC
[ENA]
¢þ
>WENV180924328
ODTK01003395
[ODTK] human metagenome; G_DNA_Supragingival plaque
6084
6011
-
Gly
CCC
[ENA]
¢þ
>WENV180927180
ODTM01000039
[ODTM] human metagenome; G_DNA_Supragingival plaque
56088
56016
-
Gly
CCC
[ENA]
¢þ
>WENV180927961
ODTM01008462
[ODTM] human metagenome; G_DNA_Supragingival plaque
944
1017
+
Gly
CCC
[ENA]
¢þ
>WENV180928456
ODTM01052209
[ODTM] human metagenome; G_DNA_Supragingival plaque
73
1
-
Gly
CCC
[ENA]
¢þ
>WENV180938128
ODTX01000698
[ODTX] human metagenome; G_DNA_Supragingival plaque
10782
10709
-
Gly
CCC
[ENA]
¢þ
>WENV180939267
ODTX01022733
[ODTX] human metagenome; G_DNA_Supragingival plaque
1495
1567
+
Gly
CCC
[ENA]
¢þ
>WENV180939782
ODTX01088920
[ODTX] human metagenome; G_DNA_Supragingival plaque
450
522
+
Gly
CCC
[ENA]
¢þ
>WENV180973067
ODUW01001069
[ODUW] human metagenome; G_DNA_Supragingival plaque
11554
11481
-
Gly
CCC
[ENA]
¢þ
>WENV180973551
ODUW01008003
[ODUW] human metagenome; G_DNA_Supragingival plaque
75
2
-
Gly
CCC
[ENA]
¢þ
>WENV180973697
ODUW01013343
[ODUW] human metagenome; G_DNA_Supragingival plaque
719
792
+
Gly
CCC
[ENA]
¢þ
>WENV180986525
ODVK01000055
[ODVK] human metagenome; G_DNA_Supragingival plaque
26810
26882
+
Gly
CCC
[ENA]
¢þ
>WENV181006726
ODWA01121365
[ODWA] human metagenome; G_DNA_Buccal mucosa
181
251
+
Gly
CCC
[ENA]
¢þ
>WENV181027909
ODXD01114083
[ODXD] human metagenome; G_DNA_Buccal mucosa
100
172
+
Gly
CCC
[ENA]
¢þ
>WENV181068002
ODZI01096716
[ODZI] human metagenome; G_DNA_Supragingival plaque
179
106
-
Gly
CCC
[ENA]
¢þ
>WENV181073538
OEAO01000444
[OEAO] human metagenome; G_DNA_Tongue dorsum
32763
32835
+
Gly
CCC
[ENA]
¢þ
>WENV181073612
OEAO01000600
[OEAO] human metagenome; G_DNA_Tongue dorsum
2538
2611
+
Gly
CCC
[ENA]
¢þ
>WENV181074175
OEAO01004065
[OEAO] human metagenome; G_DNA_Tongue dorsum
4371
4444
+
Gly
CCC
[ENA]
¢þ
>WENV181085670
OEAX01034015
[OEAX] human metagenome; G_DNA_Tongue dorsum
429
502
+
Gly
CCC
[ENA]
¢þ
>WENV181090328
OEBC01000193
[OEBC] human metagenome; G_DNA_Supragingival plaque
12381
12453
+
Gly
CCC
[ENA]
¢þ
>WENV181108052
OEEI01070313
[OEEI] human metagenome; G_DNA_Supragingival plaque
306
234
-
Gly
CCC
[ENA]
¢þ
>WENV181112826
OEEL01003670
[OEEL] human metagenome; G_DNA_Tongue dorsum
1248
1175
-
Gly
CCC
[ENA]
¢þ
>WENV181112878
OEEL01004791
[OEEL] human metagenome; G_DNA_Tongue dorsum
4706
4778
+
Gly
CCC
[ENA]
¢þ
>WENV181113549
OEEL01039921
[OEEL] human metagenome; G_DNA_Tongue dorsum
260
187
-
Gly
CCC
[ENA]
¢þ
>WENV181155780
OEIE01000048
[OEIE] human metagenome; G_DNA_Supragingival plaque
3141
3213
+
Gly
CCC
[ENA]
¢þ
>WENV181156261
OEIE01007195
[OEIE] human metagenome; G_DNA_Supragingival plaque
1828
1755
-
Gly
CCC
[ENA]
¢þ
>WENV181159178
OEIH01076579
[OEIH] human metagenome; G_DNA_Supragingival plaque
189
262
+
Gly
CCC
[ENA]
¢þ
>WENV181179165
OEJT01001707
[OEJT] human metagenome; G_DNA_Supragingival plaque
5193
5266
+
Gly
CCC
[ENA]
¢þ
>WENV181181013
OEJU01003156
[OEJU] human metagenome; G_DNA_Supragingival plaque
1
73
+
Gly
CCC
[ENA]
¢þ
>W141143118
AWSB01000025
Actinomycetota
Actinobaculum sp. oral taxon 183 oral taxon 183 str. F0552 [AWSB]
56622
56551
-
Gly
CCC
[ENA]
¡û
>WENV182943995
OKVI01002102
[OKVI] human gut metagenome; human gut
460
387
-
Gly
CCC
[ENA]
¢þ
>WENV183511740
OMJG01002842
[OMJG] food metagenome; Cotija cheese
548
477
-
Gly
CCC
[ENA]
¢þ
>WENV183511920
OMJG01013674
[OMJG] food metagenome; Cotija cheese
1399
1470
+
Gly
CCC
[ENA]
¢þ
>C181171271
CP029001
Actinomycetota
Trueperella pyogenes TP4479 [CP029001]
747415
747487
+
Gly
CCC
-
¡û
>C181171498
CP029004
Actinomycetota
Trueperella pyogenes TP-2849 [CP029004]
1168163
1168235
+
Gly
CCC
-
¡û
>W141523599
JGYK01000003
Actinomycetota
Bifidobacterium actinocoloniiforme DSM 22766 [JGYK]
79407
79478
+
Gly
CCC
[ENA]
¡û
>C191114755
CP033903
Actinomycetota
Trueperella pyogenes TP2 [CP033903]
1110889
1110817
-
Gly
CCC
-
¡û
>C191114840
CP033905
Actinomycetota
Trueperella pyogenes TP4 [CP033905]
1773537
1773464
-
Gly
CCC
-
¡û
>C191178141
CP040503
Actinomycetota
Actinomyces sp. oral taxon 848 str. F0332 [CP040503]
1565897
1565824
-
Gly
CCC
-
¡û
>W141557413
JHVD01000002
Actinomycetota
Propionibacteriaceae bacterium P6A17 [JHVD]
19774
19847
+
Gly
CCC
[ENA]
¡û
>W09134710
ACUY01000007
Actinomycetota
Actinomyces sp. oral taxon 848 oral taxon 848 str. F0332 [ACUY]
57198
57125
-
Gly
CCC
[ENA]
¡û
>W1910828943
MWWR01000010
Actinomycetota
Pseudoscardovia radai DSM 24742 [MWWR]
55614
55685
+
Gly
CCC
[ENA]
¡û
>C151086288
CP011786
Actinomycetota
Bifidobacterium actinocoloniiforme DSM 22766 [CP011786]
1500781
1500852
+
Gly
CCC
-
¡û
>W1610074502
BCWS01000007
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
110594
110521
-
Gly
CCC
[ENA]
¡û
>W1610520010
JDUR01000018
Actinomycetota
Bifidobacterium actinocoloniiforme DSM 22766 [JDUR]
13941
13870
-
Gly
CCC
[ENA]
¡û
>W1710071620
BCWS01000007
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
110594
110521
-
Gly
CCC
[ENA]
¡û
>W1710615423
JDUR01000018
Actinomycetota
Bifidobacterium actinocoloniiforme DSM 22766 [JDUR]
13941
13870
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK