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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481239 (33 seq.)
>W1711005278
LQNM01000004
Bacillota
Pediococcus pentosaceus [LQNM]
142031
141958
-
Gly
CCC
[ENA]
¡û
>W1711068935
LSFE01000002
Bacillota
Pediococcus pentosaceus [LSFE]
26694
26767
+
Gly
CCC
[ENA]
¡û
>C171119493
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
1125644
1125571
-
Gly
CCC
-
¡û
>C171126511
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
1088181
1088108
-
Gly
CCC
-
¡û
>C017426
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
705141
705214
+
Gly
CCC
[Ensembl]
¡û
>WENV180279712
OBHX01075009
[OBHX] metagenome; feces
300
370
+
Gly
CCC
[ENA]
¢þ
>WENV180333987
OBLF01003540
[OBLF] metagenome; feces
4342
4272
-
Gly
CCC
[ENA]
¢þ
>WENV180348905
OBLO01015436
[OBLO] metagenome; feces
1940
1870
-
Gly
CCC
[ENA]
¢þ
>W141241990
CAHU01000008
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
28374
28447
+
Gly
CCC
[ENA]
¡û
>WENV183790290
PPYF01411172
[PPYF] human gut metagenome; stool from patient with Crohn's disease
62775
62845
+
Gly
CCC
[ENA]
¢þ
>W141402953
JDVW01000006
Bacillota
Pediococcus pentosaceus CGMCC 7049 [JDVW]
102944
103017
+
Gly
CCC
[ENA]
¡û
>WENV170659269
JXWR01002501
[JXWR] soil metagenome; rice field; ambient CO2
12638
12565
-
Gly
CCC
[ENA]
¢þ
>C181042759
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
22234
22304
+
Gly
CCC
-
¡û
>C181203562
LN898144
Bacillota
Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 [LN898144]
717711
717781
+
Gly
CCC
-
¡û
>C191023237
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
666899
666969
+
Gly
CCC
-
¡û
>W09101461
AAEV01000007
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
64912
64839
-
Gly
CCC
[ENA]
¡û
>C141009497
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
715804
715877
+
Gly
CCC
[Ensembl]
¡û
>W1911631281
PUFB01000007
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
303049
302979
-
Gly
CCC
[ENA]
¡û
>W1810000845
BEWQ01000008
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
9728
9798
+
Gly
CCC
[ENA]
¡û
>C161092359
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
1295114
1295041
-
Gly
CCC
[Ensembl]
¡û
>W1610036296
AZFE01000030
Bacillota
Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 [AZFE]
109394
109324
-
Gly
CCC
[ENA]
¡û
>W1610057785
BBZC01000014
Bacillota
Pediococcus pentosaceus [BBZC]
28850
28923
+
Gly
CCC
[ENA]
¡û
>W1610528401
JQBF01000002
Bacillota
Pediococcus pentosaceus [JQBF]
29042
29115
+
Gly
CCC
[ENA]
¡û
>W1610529219
JQBX01000004
Bacillota
Pediococcus stilesii [JQBX]
56228
56158
-
Gly
CCC
[ENA]
¡û
>W1610530149
JQCQ01000007
Bacillota
Pediococcus argentinicus [JQCQ]
35836
35906
+
Gly
CCC
[ENA]
¡û
>W1610650087
LJIU01000003
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
27323
27396
+
Gly
CCC
[ENA]
¡û
>W1610855928
LQNM01000004
Bacillota
Pediococcus pentosaceus [LQNM]
142031
141958
-
Gly
CCC
[ENA]
¡û
>W1610909505
LSFE01000002
Bacillota
Pediococcus pentosaceus [LSFE]
26694
26767
+
Gly
CCC
[ENA]
¡û
>W1710033335
AZFE01000030
Bacillota
Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 [AZFE]
109394
109324
-
Gly
CCC
[ENA]
¡û
>W1710054484
BBZC01000014
Bacillota
Pediococcus pentosaceus [BBZC]
28850
28923
+
Gly
CCC
[ENA]
¡û
>W1710629991
JQBF01000002
Bacillota
Pediococcus pentosaceus [JQBF]
29042
29115
+
Gly
CCC
[ENA]
¡û
>W1710630809
JQBX01000004
Bacillota
Pediococcus stilesii [JQBX]
56228
56158
-
Gly
CCC
[ENA]
¡û
>W1710631739
JQCQ01000007
Bacillota
Pediococcus argentinicus [JQCQ]
35836
35906
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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