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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481341 (29 seq.)
>W1710889323
LNAL01000008
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
1358848
1358921
+
Cys
GCA
[ENA]
¡û
>W131180765
ARNJ01000061
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
113724
113795
+
Cys
GCA
[ENA]
¡û
>W131215962
ATVL01000006
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
1025175
1025248
+
Cys
GCA
[ENA]
¡û
>W1711377580
MDZB01000062
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
38054
37983
-
Cys
GCA
[ENA]
¡û
>W1711377654
MDZC01000101
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
33345
33274
-
Cys
GCA
[ENA]
¡û
>W1711726863
MTSE01000002
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
734758
734829
+
Cys
GCA
[ENA]
¡û
>W1711767871
MVBC01000003
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
192362
192289
-
Cys
GCA
[ENA]
¡û
>C191087847
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
147222
147293
+
Cys
GCA
-
¡û
>C191154873
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
1139886
1139957
+
Cys
GCA
-
¡û
>C191183801
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
3384697
3384768
+
Cys
GCA
-
¡û
>W141734718
JNLX01000127
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
60683
60612
-
Cys
GCA
[ENA]
¡û
>W1910547391
FZNS01000002
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
109005
108934
-
Cys
GCA
[ENA]
¡û
>W1810089908
PGFA01000005
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
193583
193654
+
Cys
GCA
[ENA]
¡û
>SRA1003878
SRR002328.3444
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
74
145
+
Cys
GCA
[SRA]
>W1810625909
QHKM01000005
Bacteroidota
Hymenobacter edaphi NL [QHKM]
177076
177005
-
Cys
GCA
[ENA]
¡û
>W1810678954
QKNS01000001
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
1418100
1418171
+
Cys
GCA
[ENA]
¡û
>C151009416
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
3214639
3214712
+
Cys
GCA
[Ensembl]
¡û
>C151017376
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
3478654
3478583
-
Cys
GCA
[Ensembl]
¡û
>C151064003
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
3168609
3168538
-
Cys
GCA
[Ensembl]
¡û
>C151096196
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
662050
662121
+
Cys
GCA
-
¡û
>W1511543318
JZIR01000060
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
3102
3031
-
Cys
GCA
[ENA]
¡û
>W1511582948
LATM01000011
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
46840
46769
-
Cys
GCA
[ENA]
¡û
>C161061549
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
2625537
2625608
+
Cys
GCA
[Ensembl]
¡û
>W1610749701
LNAL01000008
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
1358848
1358921
+
Cys
GCA
[ENA]
¡û
>W1710573754
FOXS01000006
Bacteroidota
Hymenobacter arizonensis [FOXS]
167293
167222
-
Cys
GCA
[ENA]
¡û
>W1710587460
FQYN01000002
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
50199
50128
-
Cys
GCA
[ENA]
¡û
>W1710590108
FRAS01000008
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
45348
45419
+
Cys
GCA
[ENA]
¡û
>W1710605422
FWWW01000076
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
26723
26794
+
Cys
GCA
[ENA]
¡û
>W1710610179
FYEW01000002
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
122546
122475
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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