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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481456 (47 seq.)
>A171001706
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
41168
41240
+
Ala
TGC
-
¡û
>A171001709
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
266923
266995
+
Ala
TGC
-
¡û
>A171001731
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
1236739
1236667
-
Ala
TGC
-
¡û
>A171003614
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
199186
199114
-
Ala
TGC
-
¡û
>A171004775
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
1544639
1544711
+
Ala
TGC
-
¡û
>A171004828
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
1461072
1461144
+
Ala
TGC
-
¡û
>A171004883
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
1912922
1912994
+
Ala
TGC
-
¡û
>A171004937
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
1353309
1353381
+
Ala
TGC
-
¡û
>A171004989
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
1283208
1283280
+
Ala
TGC
-
¡û
>A171005041
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
1352213
1352285
+
Ala
TGC
-
¡û
>A171005092
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
1370990
1371062
+
Ala
TGC
-
¡û
>A171005134
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
40969
41041
+
Ala
TGC
-
¡û
>A171005155
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
3053344
3053416
+
Ala
TGC
-
¡û
>A171005251
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
1600088
1600160
+
Ala
TGC
-
¡û
>WENV181367865
OFQD01002704
[OFQD] freshwater metagenome; Freshwater Lake
122
194
+
Ala
TGC
[ENA]
¢þ
>At1382
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
1930138
1930210
+
Ala
TGC
[Ensembl]
¡û
>At1526
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
235222
235150
-
Ala
TGC
[Ensembl]
¡û
>WENV170634807
JAHE01082974
[JAHE] sediment metagenome; lake sediment
253
179
-
Ala
TGC
[ENA]
¢þ
>W1910569293
JJOS01000035
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
192060
192132
+
Ala
TGC
[ENA]
¡û
>W1910569356
JJOT01000059
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
62459
62387
-
Ala
TGC
[ENA]
¡û
>W1910569423
JJOU01000210
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
52450
52522
+
Ala
TGC
[ENA]
¡û
>W1910569705
JJPA01000117
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
34252
34324
+
Ala
TGC
[ENA]
¡û
>W1910569804
JJPC01000039
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
3314
3242
-
Ala
TGC
[ENA]
¡û
>W1910569846
JJPD01000038
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
8018
7946
-
Ala
TGC
[ENA]
¡û
>W1910569892
JJPE01000007
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
76149
76221
+
Ala
TGC
[ENA]
¡û
>W1910569995
JJPG01000008
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
45465
45537
+
Ala
TGC
[ENA]
¡û
>W1910570058
JJPH01000042
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
34306
34378
+
Ala
TGC
[ENA]
¡û
>W1910570132
JJPI01000122
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
3669
3597
-
Ala
TGC
[ENA]
¡û
>W1910570264
JJPL01000080
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
76232
76304
+
Ala
TGC
[ENA]
¡û
>W1910570306
JJPM01000065
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
69
141
+
Ala
TGC
[ENA]
¡û
>W1910570509
JJPQ01000035
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
3316
3244
-
Ala
TGC
[ENA]
¡û
>W1910570555
JJPR01000027
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
64214
64286
+
Ala
TGC
[ENA]
¡û
>W1910570678
JJPT01000103
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
1712
1784
+
Ala
TGC
[ENA]
¡û
>W1910570834
JJPW01000060
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
117925
117997
+
Ala
TGC
[ENA]
¡û
>W1910570885
JJPX01000115
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
64252
64324
+
Ala
TGC
[ENA]
¡û
>W1910571095
JJQB01000120
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
158309
158237
-
Ala
TGC
[ENA]
¡û
>W1910571126
JJQC01000077
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
34328
34400
+
Ala
TGC
[ENA]
¡û
>W1910571167
JJQD01000069
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
52276
52348
+
Ala
TGC
[ENA]
¡û
>W1910571230
JJQE01000135
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
76165
76237
+
Ala
TGC
[ENA]
¡û
>W1910571271
JJQF01000044
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
130696
130768
+
Ala
TGC
[ENA]
¡û
>W1910571349
JJQG01000148
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
121667
121739
+
Ala
TGC
[ENA]
¡û
>W1910571371
JJQH01000086
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
3245
3173
-
Ala
TGC
[ENA]
¡û
>W1910571437
JJQI01000072
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
182266
182338
+
Ala
TGC
[ENA]
¡û
>W1910571551
JJQK01000253
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
24986
24914
-
Ala
TGC
[ENA]
¡û
>W1910571720
JJQN01000126
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
78162
78234
+
Ala
TGC
[ENA]
¡û
>W1910571753
JJQO01000083
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
114375
114447
+
Ala
TGC
[ENA]
¡û
>W1910575065
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
3622001
3621929
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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