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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.48197 (43 seq.)
>W1711096444
LTHT01000114
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
13307
13394
+
Leu
TAA
[ENA]
¡û
>WENV180154116
OAUS01015883
[OAUS] human gut metagenome; faeces
1065
978
-
Leu
TAA
[ENA]
¢þ
>WENV181341038
OFMH01005807
[OFMH] human gut metagenome; human gut
240
153
-
Leu
TAA
[ENA]
¢þ
>WENV181363675
OFOU01001328
[OFOU] human gut metagenome; human gut
578
491
-
Leu
TAA
[ENA]
¢þ
>WENV181427967
OGCU01000506
[OGCU] metagenome; Human gut stool
17239
17326
+
Leu
TAA
[ENA]
¢þ
>WENV181428367
OGCV01000297
[OGCV] metagenome; Human gut stool
327
240
-
Leu
TAA
[ENA]
¢þ
>WENV181507825
OGGP01002567
[OGGP] metagenome; Human gut stool
3160
3247
+
Leu
TAA
[ENA]
¢þ
>WENV181540219
OGIA01016487
[OGIA] metagenome; Human gut stool
688
775
+
Leu
TAA
[ENA]
¢þ
>WENV181557995
OGIW01001045
[OGIW] metagenome; Human gut stool
241
154
-
Leu
TAA
[ENA]
¢þ
>WENV181560660
OGJC01001038
[OGJC] metagenome; Human gut stool
240
153
-
Leu
TAA
[ENA]
¢þ
>WENV181579939
OGJZ01002469
[OGJZ] metagenome; Human gut stool
13285
13372
+
Leu
TAA
[ENA]
¢þ
>WENV181627889
OGMN01015898
[OGMN] metagenome; Human gut stool
910
997
+
Leu
TAA
[ENA]
¢þ
>WENV181794822
OGRS01003190
[OGRS] human gut metagenome; faeces
3404
3317
-
Leu
TAA
[ENA]
¢þ
>WENV181859825
OGWQ01012299
[OGWQ] human gut metagenome; faeces
242
155
-
Leu
TAA
[ENA]
¢þ
>WENV181879054
OGXE01034453
[OGXE] human gut metagenome; faeces
983
896
-
Leu
TAA
[ENA]
¢þ
>WENV181879060
OGXE01035556
[OGXE] human gut metagenome; faeces
724
811
+
Leu
TAA
[ENA]
¢þ
>WENV181892556
OGXP01002759
[OGXP] human gut metagenome; faeces
10631
10544
-
Leu
TAA
[ENA]
¢þ
>WENV181892569
OGXP01002895
[OGXP] human gut metagenome; faeces
6832
6745
-
Leu
TAA
[ENA]
¢þ
>WENV181948299
OGZE01001319
[OGZE] human gut metagenome; faeces
1653
1566
-
Leu
TAA
[ENA]
¢þ
>WENV181958921
OGZM01000847
[OGZM] human gut metagenome; faeces
16393
16480
+
Leu
TAA
[ENA]
¢þ
>WENV181958952
OGZM01000932
[OGZM] human gut metagenome; faeces
29435
29522
+
Leu
TAA
[ENA]
¢þ
>WENV181965628
OGZT01001808
[OGZT] human gut metagenome; faeces
13286
13373
+
Leu
TAA
[ENA]
¢þ
>WENV181970834
OGZY01000113
[OGZY] human gut metagenome; faeces
59390
59477
+
Leu
TAA
[ENA]
¢þ
>WENV182013662
OHBO01002876
[OHBO] human gut metagenome; feces
2152
2065
-
Leu
TAA
[ENA]
¢þ
>WENV182020066
OHBZ01012739
[OHBZ] human gut metagenome; feces
792
705
-
Leu
TAA
[ENA]
¢þ
>WENV182114843
OHIZ01010460
[OHIZ] human gut metagenome; feces
832
745
-
Leu
TAA
[ENA]
¢þ
>WENV182157298
OHLW01011333
[OHLW] human gut metagenome; feces
834
747
-
Leu
TAA
[ENA]
¢þ
>WENV182866925
OKRR01002444
[OKRR] human gut metagenome; faeces
13328
13415
+
Leu
TAA
[ENA]
¢þ
>WENV183290649
OLSH01001269
[OLSH] human gut metagenome; faeces
13304
13391
+
Leu
TAA
[ENA]
¢þ
>WENV183760873
PPYE01241218
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1647
1560
-
Leu
TAA
[ENA]
¢þ
>WENV183764005
PPYE01311727
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
786
699
-
Leu
TAA
[ENA]
¢þ
>C181003899
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
303734
303821
+
Leu
TAA
-
¡û
>C181161024
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
802864
802777
-
Leu
TAA
-
¡û
>C181161082
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
1100975
1100888
-
Leu
TAA
-
¡û
>C181216778
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
3089033
3088946
-
Leu
TAA
-
¡û
>C191210195
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
24993
25080
+
Leu
TAA
-
¡û
>C191219287
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
2930748
2930661
-
Leu
TAA
-
¡û
>W09118790
ACDH01000056
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
13230
13317
+
Leu
TAA
[ENA]
¡û
>W09125161
ACIE01000012
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
13274
13361
+
Leu
TAA
[ENA]
¡û
>W1810791375
QRIG01000043
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
580
493
-
Leu
TAA
[ENA]
¡û
>W1810818411
QSDE01000047
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
1766
1679
-
Leu
TAA
[ENA]
¡û
>W1810832247
QSOW01000047
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
610
523
-
Leu
TAA
[ENA]
¡û
>W121021753
AGWJ01000050
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
2069
1982
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK