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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482067 (38 seq.)
>C171127312
CP021987
Mycoplasmatota
Ureaplasma parvum hebnu3h04 [CP021987]
83478
83405
-
Gly
TCC
-
¡û
>C171127321
CP021988
Mycoplasmatota
Ureaplasma parvum hebnu3h05 [CP021988]
644550
644623
+
Gly
TCC
-
¡û
>C171127365
CP021989
Mycoplasmatota
Ureaplasma parvum hebnu3h07 [CP021989]
196368
196295
-
Gly
TCC
-
¡û
>C171127374
CP021990
Mycoplasmatota
Ureaplasma parvum hebnu1229 [CP021990]
697130
697203
+
Gly
TCC
-
¡û
>C171127400
CP021991
Mycoplasmatota
Ureaplasma parvum hebnu uu3 [CP021991]
436799
436872
+
Gly
TCC
-
¡û
>C026065
AF222894
Mycoplasmatota
Ureaplasma parvum [AF222894]
349929
350002
+
Gly
TCC
[Ensembl]
¡û
>w025457
AAZT01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 12 [AAZT]
84340
84413
+
Gly
TCC
[ENA]
¡û
>w025429
AAZS01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 11 [AAZS]
96232
96162
-
Gly
TCC
[ENA]
¡û
>w025403
AAZR01000010
Mycoplasmatota
Ureaplasma urealyticum serovar 5 [AAZR]
6059
6132
+
Gly
TCC
[ENA]
¡û
>w025372
AAZQ01000001
Mycoplasmatota
Ureaplasma parvum serovar 6 [AAZQ]
577133
577063
-
Gly
TCC
[ENA]
¡û
>w024340
AAYQ01000010
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
36763
36693
-
Gly
TCC
[ENA]
¡û
>w024330
AAYP01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 7 [AAYP]
203562
203635
+
Gly
TCC
[ENA]
¡û
>w024304
AAYO01000008
Mycoplasmatota
Ureaplasma urealyticum serovar 4 [AAYO]
38861
38934
+
Gly
TCC
[ENA]
¡û
>w024271
AAYN01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
109313
109243
-
Gly
TCC
[ENA]
¡û
>w024247
AAYM01000004
Mycoplasmatota
Ureaplasma parvum serovar 3 [AAYM]
47570
47643
+
Gly
TCC
[ENA]
¡û
>WENV180225691
OBBO01000018
[OBBO] human gut metagenome; Infant 2 DOL 5 gut
87793
87720
-
Gly
TCC
[ENA]
¢þ
>WENV180554105
OCJM01000079
[OCJM] human gut metagenome; Infant 2 DOL 6 gut
127
54
-
Gly
TCC
[ENA]
¢þ
>W08002245
ABER01000002
Mycoplasmatota
Ureaplasma parvum serovar 14 str. ATCC 33697 [ABER]
204143
204216
+
Gly
TCC
[ENA]
¡û
>W08002254
ABES01000001
Mycoplasmatota
Ureaplasma parvum serovar 1 str. ATCC 27813 [ABES]
650924
650997
+
Gly
TCC
[ENA]
¡û
>W08002299
ABET01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 10 [ABET]
96653
96583
-
Gly
TCC
[ENA]
¡û
>W08002326
ABEV01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 13 str. ATCC 33698 [ABEV]
37145
37075
-
Gly
TCC
[ENA]
¡û
>W08002829
ABFL01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 2 [ABFL]
86200
86130
-
Gly
TCC
[ENA]
¡û
>C08011090
CP000942
Mycoplasmatota
Ureaplasma parvum serovar 3 str. ATCC 27815 [CP000942]
349968
350041
+
Gly
TCC
[Ensembl]
¡û
>W141455541
JFDP01000023
Mycoplasmatota
Ureaplasma diversum NCTC 246 [JFDP]
10277
10204
-
Gly
TCC
[ENA]
¡û
>C191003509
AP018561
Mycoplasmatota
Ureaplasma parvum serovar 3 OMC-P162 [AP018561]
168939
169012
+
Gly
TCC
-
¡û
>C09110775
CP001184
Mycoplasmatota
Ureaplasma urealyticum serovar 10 str. ATCC 33699 [CP001184]
347943
348016
+
Gly
TCC
[Ensembl]
¡û
>W1911824658
QZWO01000036
Mycoplasmatota
Ureaplasma urealyticum 445 [QZWO]
1950
1877
-
Gly
TCC
[ENA]
¡û
>W1810735662
QOKT01000006
Mycoplasmatota
Ureaplasma urealyticum 1000 [QOKT]
174542
174615
+
Gly
TCC
[ENA]
¡û
>W1810735688
QOKU01000055
Mycoplasmatota
Ureaplasma urealyticum 1051 [QOKU]
6382
6455
+
Gly
TCC
[ENA]
¡û
>W1810757238
QPHI01000041
Mycoplasmatota
Ureaplasma parvum 445a [QPHI]
10095
10168
+
Gly
TCC
[ENA]
¡û
>W1810757264
QPHJ01000049
Mycoplasmatota
Ureaplasma urealyticum 1000a [QPHJ]
10189
10262
+
Gly
TCC
[ENA]
¡û
>W1810757290
QPHK01000073
Mycoplasmatota
Ureaplasma parvum 1051a [QPHK]
10117
10190
+
Gly
TCC
[ENA]
¡û
>C151002399
AP014584
Mycoplasmatota
Ureaplasma parvum serovar 3 SV3F4 [AP014584]
576490
576417
-
Gly
TCC
[Ensembl]
¡û
>C161022163
CP009770
Mycoplasmatota
Ureaplasma diversum ATCC 49782 [CP009770]
81654
81727
+
Gly
TCC
-
¡û
>W121060671
AJFX01000013
Mycoplasmatota
Ureaplasma urealyticum 2033 [AJFX]
65910
65837
-
Gly
TCC
[ENA]
¡û
>W121060676
AJFY01000003
Mycoplasmatota
Ureaplasma urealyticum 2608 [AJFY]
96473
96400
-
Gly
TCC
[ENA]
¡û
>W121060724
AJFZ01000009
Mycoplasmatota
Ureaplasma urealyticum 4155 [AJFZ]
105814
105741
-
Gly
TCC
[ENA]
¡û
>W121060751
AJGA01000012
Mycoplasmatota
Ureaplasma urealyticum 4318 [AJGA]
65909
65836
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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