This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482380 (41 seq.)
>W1710836233
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
635579
635504
-
Cys
GCA
[ENA]
¡û
>WENV180391203
OBPM01038602
[OBPM] marine metagenome; ENVO:00002010
325
250
-
Cys
GCA
[ENA]
¢þ
>WENV181189842
OEOF01261327
[OEOF] activated sludge metagenome; Activated Sludge
33
108
+
Cys
GCA
[ENA]
¢þ
>C08000263
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
2103790
2103865
+
Cys
GCA
[Ensembl]
¡û
>W141274771
JABW01000025
Campylobacterota
Aliarcobacter cibarius LMG 21996 [JABW]
9775
9850
+
Cys
GCA
[ENA]
¡û
>WENV170658113
JTFP01055848
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
357
282
-
Cys
GCA
[ENA]
¢þ
>C181225260
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
2103783
2103858
+
Cys
GCA
-
¡û
>C191084435
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
2565947
2565872
-
Cys
GCA
-
¡û
>C191084591
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
2405319
2405244
-
Cys
GCA
-
¡û
>C191147100
CP035926
Campylobacterota
Aliarcobacter thereius LMG 24486 [CP035926]
1725888
1725963
+
Cys
GCA
-
¡û
>C191178280
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
2058225
2058300
+
Cys
GCA
-
¡û
>C141005641
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
1984788
1984863
+
Cys
GCA
[Ensembl]
¡û
>W1910810901
MUXE01000028
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
1515
1440
-
Cys
GCA
[ENA]
¡û
>W1911200218
NREO01000005
Campylobacterota
Arcobacter suis CECT7833 [NREO]
140802
140877
+
Cys
GCA
[ENA]
¡û
>W1911200291
NREP01000014
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
65523
65448
-
Cys
GCA
[ENA]
¡û
>W1911426315
NXIG01000003
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
146345
146420
+
Cys
GCA
[ENA]
¡û
>W1911426371
NXIH01000003
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
71143
71218
+
Cys
GCA
[ENA]
¡û
>W1911426408
NXII01000001
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
130857
130932
+
Cys
GCA
[ENA]
¡û
>W1911426458
NXIJ01000001
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
59756
59831
+
Cys
GCA
[ENA]
¡û
>W1911576405
PDJZ01000005
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
148350
148425
+
Cys
GCA
[ENA]
¡û
>W1911746058
QVQX01000010
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
35934
36009
+
Cys
GCA
[ENA]
¡û
>W1911775180
QXMK01000006
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
76650
76575
-
Cys
GCA
[ENA]
¡û
>W1911775381
QXNB01000016
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
21315
21390
+
Cys
GCA
[ENA]
¡û
>C11101055
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
2724091
2724016
-
Cys
GCA
[Ensembl]
¡û
>W1510762836
JAIQ01000058
Campylobacterota
Aliarcobacter butzleri L348 [JAIQ]
12628
12553
-
Cys
GCA
[ENA]
¡û
>W1510762870
JAIR01000048
Campylobacterota
Aliarcobacter butzleri L349 [JAIR]
297
372
+
Cys
GCA
[ENA]
¡û
>W1510762902
JAIS01000050
Campylobacterota
Aliarcobacter butzleri L351 [JAIS]
252
327
+
Cys
GCA
[ENA]
¡û
>W1510762938
JAIT01000028
Campylobacterota
Aliarcobacter butzleri L352 [JAIT]
100305
100380
+
Cys
GCA
[ENA]
¡û
>W1510762964
JAIU01000030
Campylobacterota
Aliarcobacter butzleri L353 [JAIU]
35757
35832
+
Cys
GCA
[ENA]
¡û
>W1510762984
JAIV01000038
Campylobacterota
Aliarcobacter butzleri L354 [JAIV]
186
261
+
Cys
GCA
[ENA]
¡û
>W1510763040
JAIW01000069
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
48075
48000
-
Cys
GCA
[ENA]
¡û
>W1510763070
JAIX01000080
Campylobacterota
Aliarcobacter butzleri L350 [JAIX]
252
327
+
Cys
GCA
[ENA]
¡û
>W11143305
AEPT01000038
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
21218
21293
+
Cys
GCA
[ENA]
¡û
>W11167751
AFNL01000006
Campylobacterota
Aliarcobacter butzleri 7h1h [AFNL]
57130
57055
-
Cys
GCA
[ENA]
¡û
>W1610584999
LCUJ01000002
Campylobacterota
Aliarcobacter thereius [LCUJ]
376032
376107
+
Cys
GCA
[ENA]
¡û
>W1610585049
LCUK01000002
Campylobacterota
Aliarcobacter thereius [LCUK]
117260
117185
-
Cys
GCA
[ENA]
¡û
>W1610586406
LDIS01000001
Campylobacterota
Aliarcobacter thereius [LDIS]
126027
125952
-
Cys
GCA
[ENA]
¡û
>W1610699372
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
635579
635504
-
Cys
GCA
[ENA]
¡û
>W1710704190
LCUJ01000002
Campylobacterota
Aliarcobacter thereius [LCUJ]
376032
376107
+
Cys
GCA
[ENA]
¡û
>W1710704240
LCUK01000002
Campylobacterota
Aliarcobacter thereius [LCUK]
117260
117185
-
Cys
GCA
[ENA]
¡û
>W1710705536
LDIS01000001
Campylobacterota
Aliarcobacter thereius [LDIS]
126027
125952
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK