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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482382 (19 seq.)
>WENV180285912
OBID01810715
[OBID] metagenome; sludge
68
143
+
Lys
TTT
[ENA]
¢þ
>WENV170657820
JTFP01023065
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
441
516
+
Lys
TTT
[ENA]
¢þ
>C191084459
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
665714
665639
-
Lys
TTT
-
¡û
>C191084463
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
665284
665209
-
Lys
TTT
-
¡û
>C191084621
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
645826
645751
-
Lys
TTT
-
¡û
>C191084625
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
645375
645300
-
Lys
TTT
-
¡û
>W1910810857
MUXE01000009
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
62003
62078
+
Lys
TTT
[ENA]
¡û
>W1910810861
MUXE01000009
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
62460
62535
+
Lys
TTT
[ENA]
¡û
>W1911200205
NREO01000001
Campylobacterota
Arcobacter suis CECT7833 [NREO]
119918
119993
+
Lys
TTT
[ENA]
¡û
>W1911200209
NREO01000001
Campylobacterota
Arcobacter suis CECT7833 [NREO]
120369
120444
+
Lys
TTT
[ENA]
¡û
>W1911200256
NREP01000001
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
144829
144904
+
Lys
TTT
[ENA]
¡û
>W1911200260
NREP01000001
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
145285
145360
+
Lys
TTT
[ENA]
¡û
>W1911426321
NXIG01000005
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
83457
83382
-
Lys
TTT
[ENA]
¡û
>W1911426325
NXIG01000005
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
83027
82952
-
Lys
TTT
[ENA]
¡û
>W1911426409
NXII01000003
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
134886
134811
-
Lys
TTT
[ENA]
¡û
>W1911426413
NXII01000003
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
134436
134361
-
Lys
TTT
[ENA]
¡û
>W1911426496
NXIJ01000039
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
126
51
-
Lys
TTT
[ENA]
¡û
>W1911576388
PDJZ01000001
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
288446
288371
-
Lys
TTT
[ENA]
¡û
>C11101078
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
652350
652275
-
Lys
TTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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