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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482407 (85 seq.)
>W131230187
AUHK01000003
Bacillota
Helcococcus sueciensis DSM 17243 [AUHK]
43150
43077
-
Gly
TCC
[ENA]
¡û
>W131231031
AUID01000001
Bacillota
Proteocatella sphenisci DSM 23131 [AUID]
167801
167728
-
Gly
TCC
[ENA]
¡û
>C171130184
LT635475
Bacillota
Ezakiella massiliensis Marseille-P2951 [LT635475]
3807
3880
+
Gly
TCC
-
¡û
>C171130285
LT635480
Bacillota
Ndongobacter massiliensis Marseille-P3170 [LT635480]
138623
138696
+
Gly
TCC
-
¡û
>WENV180118497
OASD01000018
[OASD] human gut metagenome; ENVO:feces
177
250
+
Gly
TCC
[ENA]
¢þ
>WENV180194254
OAZX01001284
[OAZX] human gut metagenome; faeces
7575
7502
-
Gly
TCC
[ENA]
¢þ
>WENV180403489
OBRT01000829
[OBRT] human gut metagenome; ENVO:feces
5610
5537
-
Gly
TCC
[ENA]
¢þ
>WENV180403816
OBRT01023567
[OBRT] human gut metagenome; ENVO:feces
4
77
+
Gly
TCC
[ENA]
¢þ
>WENV180407533
OBUR01000005
[OBUR] human gut metagenome; faeces
111514
111587
+
Gly
TCC
[ENA]
¢þ
>WENV180422659
OBVV01000151
[OBVV] human gut metagenome; faeces
7535
7462
-
Gly
TCC
[ENA]
¢þ
>WENV180726192
ODGS01052759
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
89
162
+
Gly
TCC
[ENA]
¢þ
>WENV180992225
ODVP01000115
[ODVP] human metagenome; G_DNA_Buccal mucosa
7910
7837
-
Gly
TCC
[ENA]
¢þ
>WENV181119814
OEFJ01000132
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
27800
27873
+
Gly
TCC
[ENA]
¢þ
>WENV181801356
OGSB01000118
[OGSB] human gut metagenome; fecal sample 5 from infant 3
76453
76380
-
Gly
TCC
[ENA]
¢þ
>WENV181801392
OGSB01000209
[OGSB] human gut metagenome; fecal sample 5 from infant 3
355
428
+
Gly
TCC
[ENA]
¢þ
>WENV181810537
OGSV01000203
[OGSV] human gut metagenome; fecal sample 4 from infant 3
42954
42881
-
Gly
TCC
[ENA]
¢þ
>WENV181810657
OGSV01000715
[OGSV] human gut metagenome; fecal sample 4 from infant 3
997
924
-
Gly
TCC
[ENA]
¢þ
>WENV181813654
OGTD01000093
[OGTD] human gut metagenome; fecal sample 1 from infant 3
76453
76380
-
Gly
TCC
[ENA]
¢þ
>WENV181813818
OGTD01002871
[OGTD] human gut metagenome; fecal sample 1 from infant 3
997
924
-
Gly
TCC
[ENA]
¢þ
>WENV181814028
OGTE01000587
[OGTE] human gut metagenome; fecal sample 2 from infant 3
1446
1373
-
Gly
TCC
[ENA]
¢þ
>WENV181822932
OGUH01000270
[OGUH] human gut metagenome; fecal sample 3 from infant 3
15679
15606
-
Gly
TCC
[ENA]
¢þ
>WENV181823047
OGUH01004816
[OGUH] human gut metagenome; fecal sample 3 from infant 3
462
389
-
Gly
TCC
[ENA]
¢þ
>WENV182408744
OIFF01002537
[OIFF] human gut metagenome; stool
185
112
-
Gly
TCC
[ENA]
¢þ
>WENV170685812
LFRM01110020
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
137
64
-
Gly
TCC
[ENA]
¢þ
>WENV171000176
NFYZ01004377
[NFYZ] gut metagenome; feces
4
77
+
Gly
TCC
[ENA]
¢þ
>C183002750
CP027242
Bacillota
Peptostreptococcaceae bacterium oral taxon 929 W2294 [CP027242]
673836
673763
-
Gly
TCC
-
¡û
>C183002751
CP027242
Bacillota
Peptostreptococcaceae bacterium oral taxon 929 W2294 [CP027242]
518035
517962
-
Gly
TCC
-
¡û
>C193002392
CP035282
Bacillota
Acidilutibacter cellobiosedens JN-28 [CP035282]
1495995
1496068
+
Gly
TCC
-
¡û
>C193002393
CP035282
Bacillota
Acidilutibacter cellobiosedens JN-28 [CP035282]
2529491
2529418
-
Gly
TCC
-
¡û
>W09300248
ABXA01000005
Bacillota
Anaerococcus hydrogenalis DSM 7454 [ABXA]
10244
10171
-
Gly
TCC
[ENA]
¡û
>W09300249
ABXA01000034
Bacillota
Anaerococcus hydrogenalis DSM 7454 [ABXA]
28266
28193
-
Gly
TCC
[ENA]
¡û
>W1930003385
FMIF01000036
Bacillota
Sporanaerobacter sp. PP17-6a [FMIF]
465
538
+
Gly
TCC
[ENA]
¡û
>W1930003386
FMIF01000039
Bacillota
Sporanaerobacter sp. PP17-6a [FMIF]
553
626
+
Gly
TCC
[ENA]
¡û
>W1930003856
FMWM01000002
Bacillota
Peptoniphilus raoultii KHD4 [FMWM]
673791
673864
+
Gly
TCC
[ENA]
¡û
>W1930007089
FUHM01000001
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
828
901
+
Gly
TCC
[ENA]
¡û
>W1930007090
FUHM01000002
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
1283
1356
+
Gly
TCC
[ENA]
¡û
>W1930008476
FWYJ01000016
Bacillota
Clostridiales bacterium Marseille-P2986 [FWYJ]
912252
912179
-
Gly
TCC
[ENA]
¡û
>W1930008477
FWYJ01000016
Bacillota
Clostridiales bacterium Marseille-P2986 [FWYJ]
758155
758082
-
Gly
TCC
[ENA]
¡û
>W1930008587
FXVB02000047
Bacillota
Bacillota bacterium HV4-6-A5C [FXVB]
10906
10833
-
Gly
TCC
[ENA]
¡û
>W1930008588
FXVB02000062
Bacillota
Bacillota bacterium HV4-6-A5C [FXVB]
2486
2413
-
Gly
TCC
[ENA]
¡û
>W1930035936
PNHP01000002
Bacillota
Anaerococcus hydrogenalis UMB0204 [PNHP]
331813
331740
-
Gly
TCC
[ENA]
¡û
>W1911159560
NPMN01000035
Bacillota
Tissierella sp. P1 [NPMN]
291
364
+
Gly
TCC
[ENA]
¡û
>W1911159563
NPMN01000040
Bacillota
Tissierella sp. P1 [NPMN]
220
293
+
Gly
TCC
[ENA]
¡û
>W1911497725
OCSL01000002
Bacillota
Ezakiella peruensis M6.X2 [OCSL]
627923
627850
-
Gly
TCC
[ENA]
¡û
>W1911532557
OGVE01000003
Bacillota
Helcococcus massiliensis Marseille-P4590 [OGVE]
76031
75958
-
Gly
TCC
[ENA]
¡û
>W1810573582
QEKV01000006
Bacillota
Ezakiella coagulans DSM 20705 [QEKV]
114089
114016
-
Gly
TCC
[ENA]
¡û
>W1810819438
QSDY01000010
Bacillota
Veillonella sp. AM51-8BH [QSDY]
47892
47965
+
Gly
TCC
[ENA]
¡û
>C153001406
LM997412
Bacillota
Peptoniphilus sp. ING2-D1G [LM997412]
546012
546085
+
Gly
TCC
[Ensembl]
¡û
>W10300187
ACXU01000002
Bacillota
Anaerococcus vaginalis ATCC 51170 [ACXU]
890
963
+
Gly
TCC
[ENA]
¡û
>W10300188
ACXU01000015
Bacillota
Anaerococcus vaginalis ATCC 51170 [ACXU]
111285
111212
-
Gly
TCC
[ENA]
¡û
>W10300299
ADCS01000059
Bacillota
Peptoniphilus sp. oral taxon 386 oral taxon 386 str. F0131 [ADCS]
29308
29235
-
Gly
TCC
[ENA]
¡û
>W10300312
ADDO01000045
Bacillota
Peptoniphilus lacrimalis 315-B [ADDO]
658
731
+
Gly
TCC
[ENA]
¡û
>W10300533
AEAA01000112
Bacillota
Peptoniphilus sp. oral taxon 836 oral taxon 836 str. F0141 [AEAA]
657
730
+
Gly
TCC
[ENA]
¡û
>W11300260
ACXU01000002
Bacillota
Anaerococcus vaginalis ATCC 51170 [ACXU]
890
963
+
Gly
TCC
[ENA]
¡û
>W11300261
ACXU01000015
Bacillota
Anaerococcus vaginalis ATCC 51170 [ACXU]
111285
111212
-
Gly
TCC
[ENA]
¡û
>W11300384
ADCS01000059
Bacillota
Peptoniphilus sp. oral taxon 386 oral taxon 386 str. F0131 [ADCS]
29308
29235
-
Gly
TCC
[ENA]
¡û
>W11300403
ADDO01000045
Bacillota
Peptoniphilus lacrimalis 315-B [ADDO]
658
731
+
Gly
TCC
[ENA]
¡û
>W11300746
AEAA01000112
Bacillota
Peptoniphilus sp. oral taxon 836 oral taxon 836 str. F0141 [AEAA]
657
730
+
Gly
TCC
[ENA]
¡û
>W11301266
AEXN01000005
Bacillota
Anaerococcus hydrogenalis ACS-025-V-Sch4 [AEXN]
49898
49825
-
Gly
TCC
[ENA]
¡û
>W11301267
AEXN01000014
Bacillota
Anaerococcus hydrogenalis ACS-025-V-Sch4 [AEXN]
87667
87594
-
Gly
TCC
[ENA]
¡û
>W1511351118
JRMY01000020
Bacillota
Tissierellia bacterium S7-1-4 S7.1.4 [JRMY]
280
353
+
Gly
TCC
[ENA]
¡û
>W121009398
AGEI01000012
Bacillota
Helcococcus kunzii ATCC 51366 [AGEI]
42908
42981
+
Gly
TCC
[ENA]
¡û
>W1630004235
CZPW01000007
Bacillota
Fenollaria timonensis GD9 [CZPW]
173727
173654
-
Gly
TCC
[ENA]
¡û
>W1630004236
CZPW01000009
Bacillota
Fenollaria timonensis GD9 [CZPW]
1043287
1043214
-
Gly
TCC
[ENA]
¡û
>W1630004354
FAVH01000003
Bacillota
Anaerococcus rubeinfantis MT16 [FAVH]
4461
4534
+
Gly
TCC
[ENA]
¡û
>W1630004355
FAVH01000003
Bacillota
Anaerococcus rubeinfantis MT16 [FAVH]
439643
439716
+
Gly
TCC
[ENA]
¡û
>W1730003557
CZPW01000007
Bacillota
Fenollaria timonensis GD9 [CZPW]
173727
173654
-
Gly
TCC
[ENA]
¡û
>W1730003558
CZPW01000009
Bacillota
Fenollaria timonensis GD9 [CZPW]
1043287
1043214
-
Gly
TCC
[ENA]
¡û
>W1730003643
FAVH01000003
Bacillota
Anaerococcus rubeinfantis MT16 [FAVH]
4461
4534
+
Gly
TCC
[ENA]
¡û
>W1730003644
FAVH01000003
Bacillota
Anaerococcus rubeinfantis MT16 [FAVH]
439643
439716
+
Gly
TCC
[ENA]
¡û
>W1730010354
FQXI01000013
Bacillota
Anaerosphaera aminiphila DSM 21120 [FQXI]
54363
54290
-
Gly
TCC
[ENA]
¡û
>W1730010364
FQXR01000021
Bacillota
Sporanaerobacter acetigenes DSM 13106 [FQXR]
204
277
+
Gly
TCC
[ENA]
¡û
>W1730020580
LTEJ01000007
Bacillota
Anaerococcus sp. HMSC065G05 [LTEJ]
167
240
+
Gly
TCC
[ENA]
¡û
>W1730020581
LTEJ01000037
Bacillota
Anaerococcus sp. HMSC065G05 [LTEJ]
733
660
-
Gly
TCC
[ENA]
¡û
>W1730020582
LTEJ01000039
Bacillota
Anaerococcus sp. HMSC065G05 [LTEJ]
204
131
-
Gly
TCC
[ENA]
¡û
>W1730020635
LTGD01000020
Bacillota
Anaerosphaera sp. HMSC064C01 [LTGD]
146
219
+
Gly
TCC
[ENA]
¡û
>W1730020636
LTGD01000021
Bacillota
Anaerosphaera sp. HMSC064C01 [LTGD]
56
129
+
Gly
TCC
[ENA]
¡û
>W1730020651
LTGQ01000067
Bacillota
Anaerococcus sp. HMSC068A02 [LTGQ]
997
1070
+
Gly
TCC
[ENA]
¡û
>W1730020652
LTGQ01000079
Bacillota
Anaerococcus sp. HMSC068A02 [LTGQ]
107
34
-
Gly
TCC
[ENA]
¡û
>W1730020974
LTSR01000056
Bacillota
Anaerococcus sp. HMSC075B03 [LTSR]
105
32
-
Gly
TCC
[ENA]
¡û
>W1730020975
LTSR01000058
Bacillota
Anaerococcus sp. HMSC075B03 [LTSR]
599
672
+
Gly
TCC
[ENA]
¡û
>W1730020976
LTSR01000062
Bacillota
Anaerococcus sp. HMSC075B03 [LTSR]
639
712
+
Gly
TCC
[ENA]
¡û
>W1710582491
FQTY01000026
Bacillota
Tissierella praeacuta DSM 18095 [FQTY]
288
361
+
Gly
TCC
[ENA]
¡û
>W1710582509
FQTY01000032
Bacillota
Tissierella praeacuta DSM 18095 [FQTY]
682
755
+
Gly
TCC
[ENA]
¡û
>W133003531
ARKX01000020
Bacillota
Peptoniphilus lacrimalis DSM 7455 [ARKX]
23348
23275
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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