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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482602 (78 seq.)
>W131215371
ATUY01000006
Actinomycetota
Actinotignum urinale DSM 15805 [ATUY]
116841
116768
-
Gly
CCC
[ENA]
¡û
>W131223997
AUCL01000019
Actinomycetota
Bifidobacterium tsurumiense DSM 17777 [AUCL]
37851
37924
+
Gly
CCC
[ENA]
¡û
>C171130953
LT706985
Actinomycetota
Vaginimicrobium propionicum Marseille-P3275 [LT706985]
1364471
1364400
-
Gly
CCC
-
¡û
>WENV180190967
OAXB01000082
[OAXB] human gut metagenome; faeces
8185
8258
+
Gly
CCC
[ENA]
¢þ
>WENV180332925
OBLF01000040
[OBLF] metagenome; feces
131898
131971
+
Gly
CCC
[ENA]
¢þ
>WENV180415241
OBVE01000056
[OBVE] human gut metagenome; faeces
49461
49534
+
Gly
CCC
[ENA]
¢þ
>WENV180478356
OBZB01000178
[OBZB] human gut metagenome; faeces
573
646
+
Gly
CCC
[ENA]
¢þ
>WENV180492529
OBZX01000001
[OBZX] human gut metagenome; faeces
99396
99469
+
Gly
CCC
[ENA]
¢þ
>WENV180492926
OBZY01000015
[OBZY] human gut metagenome; faeces
99399
99472
+
Gly
CCC
[ENA]
¢þ
>WENV181132549
OEGE01003814
[OEGE] human metagenome; G_DNA_Stool
3183
3110
-
Gly
CCC
[ENA]
¢þ
>WENV181173661
OEJK01004445
[OEJK] human metagenome; G_DNA_Posterior fornix
143
216
+
Gly
CCC
[ENA]
¢þ
>WENV181355646
OFMT01005199
[OFMT] human gut metagenome; human gut
1567
1640
+
Gly
CCC
[ENA]
¢þ
>WENV181673298
OGOO01001848
[OGOO] human gut metagenome; faeces
13875
13802
-
Gly
CCC
[ENA]
¢þ
>WENV181744588
OGQM01001220
[OGQM] human gut metagenome; faeces
12700
12627
-
Gly
CCC
[ENA]
¢þ
>WENV181753787
OGQR01002435
[OGQR] human gut metagenome; faeces
8577
8504
-
Gly
CCC
[ENA]
¢þ
>WENV181904483
OGXX01013949
[OGXX] human gut metagenome; faeces
648
575
-
Gly
CCC
[ENA]
¢þ
>WENV182281407
OHVB01002497
[OHVB] human gut metagenome; feces
1964
2037
+
Gly
CCC
[ENA]
¢þ
>WENV182282737
OHVI01013427
[OHVI] human gut metagenome; feces
666
739
+
Gly
CCC
[ENA]
¢þ
>WENV182290220
OHVX01005801
[OHVX] human gut metagenome; feces
1763
1836
+
Gly
CCC
[ENA]
¢þ
>WENV182292615
OHWB01001190
[OHWB] human gut metagenome; feces
2292
2365
+
Gly
CCC
[ENA]
¢þ
>WENV182298695
OHWJ01004013
[OHWJ] human gut metagenome; feces
644
571
-
Gly
CCC
[ENA]
¢þ
>WENV182303740
OHWY01001403
[OHWY] human gut metagenome; feces
2500
2427
-
Gly
CCC
[ENA]
¢þ
>WENV182305347
OHXB01008578
[OHXB] human gut metagenome; feces
1631
1558
-
Gly
CCC
[ENA]
¢þ
>WENV182311410
OHXS01002910
[OHXS] human gut metagenome; feces
1482
1555
+
Gly
CCC
[ENA]
¢þ
>WENV182329936
OHZF01000740
[OHZF] human gut metagenome; feces
10389
10316
-
Gly
CCC
[ENA]
¢þ
>WENV182336014
OHZS01001435
[OHZS] human gut metagenome; feces
4663
4590
-
Gly
CCC
[ENA]
¢þ
>WENV182336845
OHZT01004524
[OHZT] human gut metagenome; feces
1114
1041
-
Gly
CCC
[ENA]
¢þ
>WENV182337933
OHZY01002824
[OHZY] human gut metagenome; feces
596
669
+
Gly
CCC
[ENA]
¢þ
>WENV182342461
OIAH01002686
[OIAH] human gut metagenome; feces
845
918
+
Gly
CCC
[ENA]
¢þ
>WENV182348635
OIAZ01015647
[OIAZ] human gut metagenome; feces
354
281
-
Gly
CCC
[ENA]
¢þ
>WENV182351225
OIBG01011237
[OIBG] human gut metagenome; feces
1347
1274
-
Gly
CCC
[ENA]
¢þ
>WENV182363767
OICG01001934
[OICG] human gut metagenome; feces
1934
1861
-
Gly
CCC
[ENA]
¢þ
>WENV182386082
OIDX01008085
[OIDX] human gut metagenome; feces
276
349
+
Gly
CCC
[ENA]
¢þ
>WENV182627281
OJKP01092381
[OJKP] metagenome; faeces
146
219
+
Gly
CCC
[ENA]
¢þ
>WENV182821811
OKBA01001586
[OKBA] human gut metagenome; human gut
2484
2557
+
Gly
CCC
[ENA]
¢þ
>WENV182827208
OKCX01000400
[OKCX] human gut metagenome; human gut
2419
2492
+
Gly
CCC
[ENA]
¢þ
>WENV182865312
OKQJ01000362
[OKQJ] human gut metagenome; human gut
2886
2959
+
Gly
CCC
[ENA]
¢þ
>WENV182919997
OKTZ01002535
[OKTZ] human gut metagenome; feces
838
911
+
Gly
CCC
[ENA]
¢þ
>WENV182925172
OKUI01014985
[OKUI] human gut metagenome; feces
229
302
+
Gly
CCC
[ENA]
¢þ
>WENV182928575
OKUO01003163
[OKUO] human gut metagenome; feces
1906
1979
+
Gly
CCC
[ENA]
¢þ
>WENV182932515
OKUU01009793
[OKUU] human gut metagenome; feces
1477
1550
+
Gly
CCC
[ENA]
¢þ
>WENV183037409
OLGA01021983
[OLGA] human gut metagenome; faeces
18
91
+
Gly
CCC
[ENA]
¢þ
>WENV183090546
OLKA01002026
[OLKA] human gut metagenome; human gut
260
187
-
Gly
CCC
[ENA]
¢þ
>WENV183155175
OLOR01088075
[OLOR] human gut metagenome; faeces
216
143
-
Gly
CCC
[ENA]
¢þ
>WENV183210669
OLQC01003812
[OLQC] human gut metagenome; faeces
2572
2645
+
Gly
CCC
[ENA]
¢þ
>WENV183304961
OLSX01000058
[OLSX] human gut metagenome; faeces
50986
50913
-
Gly
CCC
[ENA]
¢þ
>WENV183654996
OQWD01003376
[OQWD] human gut metagenome; human gut
1334
1407
+
Gly
CCC
[ENA]
¢þ
>WENV170690461
LFRM01342100
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
592
519
-
Gly
CCC
[ENA]
¢þ
>W141523653
JGYL01000005
Actinomycetota
Bifidobacterium angulatum [JGYL]
62987
62914
-
Gly
CCC
[ENA]
¡û
>W141523982
JGYS01000014
Actinomycetota
Bifidobacterium callitrichos DSM 23973 [JGYS]
20607
20534
-
Gly
CCC
[ENA]
¡û
>W141524508
JGZC01000010
Actinomycetota
Bifidobacterium merycicum [JGZC]
132343
132416
+
Gly
CCC
[ENA]
¡û
>W141524567
JGZE01000008
Actinomycetota
Bifidobacterium mongoliense DSM 21395 [JGZE]
87500
87573
+
Gly
CCC
[ENA]
¡û
>W141524688
JGZG01000010
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum [JGZG]
22079
22006
-
Gly
CCC
[ENA]
¡û
>W141525070
JGZO01000012
Actinomycetota
Bifidobacterium scardovii [JGZO]
204611
204538
-
Gly
CCC
[ENA]
¡û
>W141525348
JGZU01000013
Actinomycetota
Bifidobacterium tsurumiense [JGZU]
414
341
-
Gly
CCC
[ENA]
¡û
>W09113534
ABYS02000003
Actinomycetota
Bifidobacterium angulatum DSM 20098 [ABYS]
63029
62956
-
Gly
CCC
[ENA]
¡û
>W1911078353
NMWU01000028
Actinomycetota
Bifidobacterium margollesii 61 [NMWU]
24734
24662
-
Gly
CCC
[ENA]
¡û
>W1911539530
ONAO01000030
Actinomycetota
Bifidobacterium merycicum [ONAO]
1493
1565
+
Gly
CCC
[ENA]
¡û
>W1911597388
PNHX01000001
Actinomycetota
Actinotignum urinale UMB0759 [PNHX]
120030
119957
-
Gly
CCC
[ENA]
¡û
>W1911768191
QXGI01000002
Actinomycetota
Bifidobacterium castoris 2020B [QXGI]
190035
190106
+
Gly
CCC
[ENA]
¡û
>W1810046157
NJNQ01000006
Actinomycetota
Bifidobacterium sp. N4G05 [NJNQ]
44423
44350
-
Gly
CCC
[ENA]
¡û
>W1810069512
PEBK01000002
Actinomycetota
Bifidobacterium simiarum TRI 7 [PEBK]
306205
306132
-
Gly
CCC
[ENA]
¡û
>C151000195
AP012322
Actinomycetota
Bifidobacterium angulatum DSM 20098 = JCM 7096 [AP012322]
1921142
1921069
-
Gly
CCC
[Ensembl]
¡û
>C151000513
AP012331
Actinomycetota
Bifidobacterium scardovii JCM 12489 = DSM 13734 [AP012331]
156132
156205
+
Gly
CCC
[Ensembl]
¡û
>C151024218
CP007457
Actinomycetota
Bifidobacterium pseudolongum PV8-2 [CP007457]
117746
117817
+
Gly
CCC
[Ensembl]
¡û
>W1511437577
JULC01000076
Actinomycetota
Bifidobacterium scardovii 981_BLON [JULC]
19443
19516
+
Gly
CCC
[ENA]
¡û
>W1511566714
LAHN01000005
Actinomycetota
Bifidobacterium angulatum GT102 [LAHN]
22527
22454
-
Gly
CCC
[ENA]
¡û
>W1511592057
LBIB01000023
Actinomycetota
Bifidobacterium scardovii JCM 12489 = DSM 13734 [LBIB]
19843
19916
+
Gly
CCC
[ENA]
¡û
>C161069353
CP014241
Actinomycetota
Bifidobacterium angulatum GT102 [CP014241]
422109
422036
-
Gly
CCC
[Ensembl]
¡û
>W1610518524
JDTL01000006
Actinomycetota
Bifidobacterium merycicum DSM 6492 [JDTL]
132170
132243
+
Gly
CCC
[ENA]
¡û
>W1610518647
JDTN01000049
Actinomycetota
Bifidobacterium scardovii JCM 12489 = DSM 13734 [JDTN]
15020
14947
-
Gly
CCC
[ENA]
¡û
>W1610518828
JDTR01000023
Actinomycetota
Bifidobacterium tsurumiense DSM 17777 [JDTR]
37543
37616
+
Gly
CCC
[ENA]
¡û
>W1610519146
JDTY01000005
Actinomycetota
Bifidobacterium angulatum DSM 20098 = JCM 7096 [JDTY]
19111
19038
-
Gly
CCC
[ENA]
¡û
>W1710582454
FQTX01000005
Actinomycetota
Bifidobacterium merycicum DSM 6492 [FQTX]
132471
132544
+
Gly
CCC
[ENA]
¡û
>W1710614044
JDTL01000006
Actinomycetota
Bifidobacterium merycicum DSM 6492 [JDTL]
132170
132243
+
Gly
CCC
[ENA]
¡û
>W1710614167
JDTN01000049
Actinomycetota
Bifidobacterium scardovii JCM 12489 = DSM 13734 [JDTN]
15020
14947
-
Gly
CCC
[ENA]
¡û
>W1710614348
JDTR01000023
Actinomycetota
Bifidobacterium tsurumiense DSM 17777 [JDTR]
37543
37616
+
Gly
CCC
[ENA]
¡û
>W1710614601
JDTY01000005
Actinomycetota
Bifidobacterium angulatum DSM 20098 = JCM 7096 [JDTY]
19111
19038
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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