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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482602 (22 seq.)
>W131144722
AQFQ01000011
Bacillota
Clostridium sp. MD294 ASF356 [AQFQ]
24594
24523
-
Glu
TTC
[ENA]
¡û
>W131144742
AQFQ01000026
Bacillota
Clostridium sp. MD294 ASF356 [AQFQ]
80914
80843
-
Glu
TTC
[ENA]
¡û
>W1712042479
NFLT01000007
Bacillota
Tyzzerella sp. An114 [NFLT]
3856
3927
+
Glu
TTC
[ENA]
¡û
>W1712042494
NFLT01000013
Bacillota
Tyzzerella sp. An114 [NFLT]
35
106
+
Glu
TTC
[ENA]
¡û
>WENV180711313
ODFM01153965
[ODFM] human metagenome; G_DNA_Stool
10
83
+
Glu
TTC
[ENA]
¡û
>WENV180867870
ODLK01025185
[ODLK] human metagenome; G_DNA_Stool
631
704
+
Glu
TTC
[ENA]
¡û
>WENV180965711
ODUP01005174
[ODUP] human metagenome; G_DNA_Stool
293
366
+
Glu
TTC
[ENA]
¡û
>WENV181236927
OFEZ01038835
[OFEZ] mouse gut metagenome; faeces
401
330
-
Glu
TTC
[ENA]
¡û
>WENV181268738
OFGD01055680
[OFGD] mouse gut metagenome; faeces
81
10
-
Glu
TTC
[ENA]
¡û
>WENV181271537
OFGF01055232
[OFGF] mouse gut metagenome; faeces
659
730
+
Glu
TTC
[ENA]
¡û
>WENV181462719
OGEN01031140
[OGEN] metagenome; Human gut stool
817
746
-
Glu
TTC
[ENA]
¡û
>WENV181571890
OGJP01016529
[OGJP] metagenome; Human gut stool
662
733
+
Glu
TTC
[ENA]
¡û
>WENV181887813
OGXL01027303
[OGXL] human gut metagenome; faeces
111
184
+
Glu
TTC
[ENA]
¡û
>WENV181953250
OGZI01004201
[OGZI] human gut metagenome; faeces
8649
8576
-
Glu
TTC
[ENA]
¡û
>WENV182380958
OIDP01027145
[OIDP] human gut metagenome; feces
594
667
+
Glu
TTC
[ENA]
¡û
>WENV182782128
OJSE01047619
[OJSE] human gut metagenome; human gut
211
138
-
Glu
TTC
[ENA]
¡û
>WENV182794811
OJSP01048170
[OJSP] human gut metagenome; human gut
390
317
-
Glu
TTC
[ENA]
¡û
>WENV182802500
OJUG01015873
[OJUG] human gut metagenome; human gut
2300
2227
-
Glu
TTC
[ENA]
¡û
>WENV183241365
OLRA01114546
[OLRA] human gut metagenome; faeces
104
31
-
Glu
TTC
[ENA]
¡û
>WENV183778531
PPYF01128295
[PPYF] human gut metagenome; stool from patient with Crohn's disease
393
320
-
Glu
TTC
[ENA]
¡û
>C231393273
CP097810
Bacillota
Clostridium sp. MD294 ASF356 [CP097810]
1170901
1170972
+
Glu
TTC
-
¡û
>C231393291
CP097810
Bacillota
Clostridium sp. MD294 ASF356 [CP097810]
1541429
1541500
+
Glu
TTC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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