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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.48275 (44 seq.)
>W1711723612
MTPL01000013
Gammaproteobacteria
Escherichia coli [MTPL]
107
19
-
Ser
GGA
[ENA]
¡û
>C173000907
CP017181
Gammaproteobacteria
Enterobacter kobei DSM 13645 [CP017181]
1723006
1722919
-
Ser
GGA
-
¡û
>C173001383
CP019194
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC ATCC 43845 [CP019194]
2975967
2976054
+
Ser
GGA
-
¡û
>W141059032
AOYR01000013
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Mbandaka str. ATCC 51958 [AOYR]
40425
40513
+
Ser
GGA
[ENA]
¡û
>WENV170704593
LLEL01004705
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
527
615
+
Ser
GGA
[ENA]
¡û
>W143000640
ALHY01000169
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Enteritidis str. SARB17 [ALHY]
39309
39396
+
Ser
GGA
[ENA]
¡û
>W143001652
AUQC01000029
Gammaproteobacteria
Escherichia coli O104:H21 str. CFSAN002236 [AUQC]
10697
10610
-
Ser
GGA
[ENA]
¡û
>W143001653
AUQC01000080
Gammaproteobacteria
Escherichia coli O104:H21 str. CFSAN002236 [AUQC]
15779
15866
+
Ser
GGA
[ENA]
¡û
>W143003624
AYEH01000052
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Newport str. VA_R100512570 [AYEH]
7062
7149
+
Ser
GGA
[ENA]
¡û
>W143004812
BAKT01000021
Gammaproteobacteria
Escherichia coli JCM 18426 [BAKT]
1440
1353
-
Ser
GGA
[ENA]
¡û
>W143005897
CBWQ010000052
Gammaproteobacteria
Klebsiella pneumoniae ISC21 [CBWQ]
2709
2622
-
Ser
GGA
[ENA]
¡û
>W143005899
CBWQ010000273
Gammaproteobacteria
Klebsiella pneumoniae ISC21 [CBWQ]
232
145
-
Ser
GGA
[ENA]
¡û
>SRA1004405
SRR006906.22014
metagenomic water samples (SRP000427)
50
137
+
Ser
GGA
[SRA]
>SRA1004534
SRR006906.60369
metagenomic water samples (SRP000427)
130
43
-
Ser
GGA
[SRA]
>C153000539
CP008805
Gammaproteobacteria
Escherichia coli O157:H7 str. SS17 [CP008805]
1398568
1398481
-
Ser
GGA
[Ensembl]
¡û
>C231204658
CP085197
Gammaproteobacteria
Klebsiella quasipneumoniae NDM-101 [CP085197]
3849762
3849850
+
Ser
GGA
-
¡û
>C163000267
CP010512
Gammaproteobacteria
Enterobacter cloacae colR/S [CP010512]
4023326
4023413
+
Ser
GGA
-
¡û
>C163000268
CP010512
Gammaproteobacteria
Enterobacter cloacae colR/S [CP010512]
4026340
4026427
+
Ser
GGA
-
¡û
>C163001073
CP014488
Gammaproteobacteria
Escherichia coli G749 [CP014488]
895110
895023
-
Ser
GGA
-
¡û
>C163001311
CP015500
Gammaproteobacteria
Klebsiella pneumoniae SKGH01 [CP015500]
3210647
3210734
+
Ser
GGA
-
¡û
>C163001387
CP015990
Gammaproteobacteria
Klebsiella pneumoniae BR [CP015990]
3414399
3414486
+
Ser
GGA
-
¡û
>W123002243
AKNF01000364
Gammaproteobacteria
Shigella flexneri 1235-66 [AKNF]
1396
1309
-
Ser
GGA
[ENA]
¡û
>W1630000453
AMNZ01000024
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Heidelberg str. 79-0480 [AMNZ]
60058
60145
+
Ser
GGA
[ENA]
¡û
>W1630009563
JRZP01000016
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium [JRZP]
1797
1710
-
Ser
GGA
[ENA]
¡û
>W1630009710
JUDY01000069
Gammaproteobacteria
Escherichia coli [JUDY]
432
345
-
Ser
GGA
[ENA]
¡û
>W1630010204
LFCE01000034
Gammaproteobacteria
Salmonella enterica subsp. enterica [LFCE]
28837
28750
-
Ser
GGA
[ENA]
¡û
>W1630013678
LMZB01000001
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Infantis [LMZB]
90362
90275
-
Ser
GGA
[ENA]
¡û
>W1630013679
LMZB01000003
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Infantis [LMZB]
60779
60866
+
Ser
GGA
[ENA]
¡û
>W1630017418
LSBT01000048
Gammaproteobacteria
Escherichia coli [LSBT]
10795
10708
-
Ser
GGA
[ENA]
¡û
>W1730000223
AMNZ01000024
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Heidelberg str. 79-0480 [AMNZ]
60058
60145
+
Ser
GGA
[ENA]
¡û
>W1730011488
JRZP01000016
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium [JRZP]
1797
1710
-
Ser
GGA
[ENA]
¡û
>W1730011651
JUDY01000069
Gammaproteobacteria
Escherichia coli [JUDY]
432
345
-
Ser
GGA
[ENA]
¡û
>W1730012535
LFCE01000034
Gammaproteobacteria
Salmonella enterica subsp. enterica [LFCE]
28837
28750
-
Ser
GGA
[ENA]
¡û
>W1730016172
LMZB01000001
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Infantis [LMZB]
90362
90275
-
Ser
GGA
[ENA]
¡û
>W1730016173
LMZB01000003
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Infantis [LMZB]
60779
60866
+
Ser
GGA
[ENA]
¡û
>W1730020081
LSBT01000048
Gammaproteobacteria
Escherichia coli [LSBT]
10795
10708
-
Ser
GGA
[ENA]
¡û
>W1730025961
MBRQ01000205
Gammaproteobacteria
Cronobacter sakazakii [MBRQ]
3193
3106
-
Ser
GGA
[ENA]
¡û
>W1730026376
MDJJ01000015
Gammaproteobacteria
Shigella sp. FC1180 [MDJJ]
4917
4830
-
Ser
GGA
[ENA]
¡û
>W1730026657
MECX01000032
Gammaproteobacteria
Shigella sp. FC1139 [MECX]
1955
1868
-
Ser
GGA
[ENA]
¡û
>W1730030553
MLGF01000001
Gammaproteobacteria
Escherichia coli [MLGF]
686113
686026
-
Ser
GGA
[ENA]
¡û
>W1730033106
MPGS01000001
Gammaproteobacteria
Escherichia coli [MPGS]
3388587
3388500
-
Ser
GGA
[ENA]
¡û
>W1730038723
NCTN01000001
Gammaproteobacteria
Klebsiella pneumoniae [NCTN]
3626439
3626352
-
Ser
GGA
[ENA]
¡û
>W1730041898
NJFF01000002
Gammaproteobacteria
Salmonella enterica [NJFF]
2792670
2792583
-
Ser
GGA
[ENA]
¡û
>W1730041899
NJFF01000002
Gammaproteobacteria
Salmonella enterica [NJFF]
2641281
2641194
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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