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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483389 (4 seq.)
>W2011488760
RSCL01000002
Cyanobacteriota
Calothrix desertica PCC 7102 [RSCL]
255242
255171
-
Glu
TTC
[ENA]
¡û
>W2012080905
VLKB01000008
Cyanobacteriota
Calothrix desertica PCC 7102 [VLKB]
197253
197182
-
Glu
TTC
[ENA]
¡û
>W2110072907
BPQA01000002
Cyanobacteriota
Rivularia sp. IAM M-261 [BPQA]
734291
734220
-
Glu
TTC
[ENA]
¡û
>C211029036
AP025018
Cyanobacteriota
Calothrix sp. PCC 7716 [AP025018]
2887368
2887439
+
Glu
TTC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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