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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483670 (30 seq.)
>W131001375
AGYD01000005
Campylobacterota
Campylobacter ureolyticus ACS-301-V-Sch3b [AGYD]
266567
266642
+
Thr
TGT
[ENA]
¡û
>W131171370
ARGD01000036
Campylobacterota
Campylobacter ureolyticus DSM 20703 [ARGD]
166611
166536
-
Thr
TGT
[ENA]
¡û
>WENV180339554
OBLI01005637
[OBLI] pig gut metagenome; faeces
1621
1546
-
Thr
TGT
[ENA]
¢þ
>WENV180725596
ODGS01000415
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
77
152
+
Thr
TGT
[ENA]
¢þ
>WENV180806384
ODJH01015962
[ODJH] human metagenome; G_DNA_Tongue dorsum
705
780
+
Thr
TGT
[ENA]
¢þ
>WENV180979532
ODVC01000274
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
18016
18091
+
Thr
TGT
[ENA]
¢þ
>WENV181010432
ODWH01011116
[ODWH] human metagenome; G_DNA_Buccal mucosa
521
596
+
Thr
TGT
[ENA]
¢þ
>WENV181066742
ODZI01001382
[ODZI] human metagenome; G_DNA_Supragingival plaque
99
24
-
Thr
TGT
[ENA]
¢þ
>WENV181120313
OEFJ01023218
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
194
269
+
Thr
TGT
[ENA]
¢þ
>WENV181804446
OGSF01000880
[OGSF] human gut metagenome; fecal sample 3 from infant 5
1923
1998
+
Thr
TGT
[ENA]
¢þ
>WENV181806403
OGSK01004020
[OGSK] human gut metagenome; fecal sample 2 from infant 5
501
576
+
Thr
TGT
[ENA]
¢þ
>WENV181811221
OGSY01000288
[OGSY] human gut metagenome; fecal sample 5 from infant 8
23609
23534
-
Thr
TGT
[ENA]
¢þ
>WENV181821341
OGUE01000731
[OGUE] human gut metagenome; fecal sample 1 from infant 5
1815
1740
-
Thr
TGT
[ENA]
¢þ
>WENV182644362
OJLW01027302
[OJLW] metagenome; surface
382
457
+
Thr
TGT
[ENA]
¢þ
>WENV170716853
LSQX01014191
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1664
1739
+
Thr
TGT
[ENA]
¢þ
>W141451042
JFAP01000004
Campylobacterota
Campylobacter corcagiensis CIT045 [JFAP]
208157
208082
-
Thr
TGT
[ENA]
¡û
>W141463417
JFJK01000009
Campylobacterota
Campylobacter ureolyticus [JFJK]
103220
103145
-
Thr
TGT
[ENA]
¡û
>C181038832
CP019682
Campylobacterota
Campylobacter sputorum aubsp. sputorum RM3237 [CP019682]
453736
453811
+
Thr
TGT
-
¡û
>C181038876
CP019683
Campylobacterota
Campylobacter sputorum bv. faecalis CCUG 20703 [CP019683]
451500
451575
+
Thr
TGT
-
¡û
>C181038921
CP019684
Campylobacterota
Campylobacter sputorum bv. paraureolyticus LMG 11764 LMG 17589 [CP019684]
447290
447365
+
Thr
TGT
-
¡û
>C181038966
CP019685
Campylobacterota
Campylobacter sputorum RM8705 [CP019685]
422093
422168
+
Thr
TGT
-
¡û
>W1810187711
PKHU01000003
Campylobacterota
Campylobacter ureolyticus UMB0112 [PKHU]
65495
65420
-
Thr
TGT
[ENA]
¡û
>C151092529
CP012195
Campylobacterota
Campylobacter ureolyticus RIGS 9880 [CP012195]
1280806
1280731
-
Thr
TGT
-
¡û
>W1511205868
JMTI01000018
Campylobacterota
Campylobacter sputorum biovar sputorum INTA08/209 [JMTI]
146508
146433
-
Thr
TGT
[ENA]
¡û
>W1610419713
FIZO01000003
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZO]
102093
102168
+
Thr
TGT
[ENA]
¡û
>W1610419758
FIZP01000005
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZP]
105939
105864
-
Thr
TGT
[ENA]
¡û
>W1610419786
FIZQ01000004
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZQ]
101935
102010
+
Thr
TGT
[ENA]
¡û
>W1710419449
FIZO01000003
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZO]
102093
102168
+
Thr
TGT
[ENA]
¡û
>W1710419494
FIZP01000005
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZP]
105939
105864
-
Thr
TGT
[ENA]
¡û
>W1710419522
FIZQ01000004
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZQ]
101935
102010
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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