This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.484425 (30 seq.)
>W131220759
ATZT01000075
Actinomycetota
actinobacterium SCGC AAA028-N15 [ATZT]
2192
2117
-
Pro
TGG
[ENA]
¡û
>WENV181126230
OEFV01023019
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
453
378
-
Pro
TGG
[ENA]
¢þ
>WENV181162796
OEIO01015525
[OEIO] marine metagenome; sea ice
684
759
+
Pro
TGG
[ENA]
¢þ
>WENV181368824
OFQN01001073
[OFQN] freshwater metagenome; Freshwater Lake
1603
1676
+
Pro
TGG
[ENA]
¢þ
>WENV181369447
OFQP01002245
[OFQP] freshwater metagenome; Freshwater Lake
616
543
-
Pro
TGG
[ENA]
¢þ
>WENV181370850
OFQT01020824
[OFQT] freshwater metagenome; Freshwater Lake
109
36
-
Pro
TGG
[ENA]
¢þ
>WENV181391166
OFRQ01050476
[OFRQ] seawater metagenome; seawater
202
277
+
Pro
TGG
[ENA]
¢þ
>WENV181401025
OFSF01043677
[OFSF] wastewater metagenome; Exp Tend VB 100WW
791
716
-
Pro
TGG
[ENA]
¢þ
>WENV183615848
OOEB01184366
[OOEB] marine metagenome; sea ice
175
250
+
Pro
TGG
[ENA]
¢þ
>WENV183629919
OOGR01000319
[OOGR] marine metagenome; seawater
1408
1333
-
Pro
TGG
[ENA]
¢þ
>WENV183676138
ORJL011590731
[ORJL] groundwater metagenome; groundwater
1983
1908
-
Pro
TGG
[ENA]
¢þ
>WENV170568209
FLMP01022467
[FLMP] seawater metagenome; seawater
1456
1381
-
Pro
TGG
[ENA]
¢þ
>WENV170571104
FLOH01000071
[FLOH] marine metagenome; water
218886
218811
-
Pro
TGG
[ENA]
¢þ
>WENV170571860
FLOH01000347
[FLOH] marine metagenome; water
33241
33316
+
Pro
TGG
[ENA]
¢þ
>WENV170571939
FLOH01000400
[FLOH] marine metagenome; water
86474
86549
+
Pro
TGG
[ENA]
¢þ
>WENV170572408
FLOH01000827
[FLOH] marine metagenome; water
24038
24113
+
Pro
TGG
[ENA]
¢þ
>WENV170626795
FUWD013229528
[FUWD] metagenome; unknown
7698
7623
-
Pro
TGG
[ENA]
¢þ
>WENV170627439
FUWD013232788
[FUWD] metagenome; unknown
84189
84114
-
Pro
TGG
[ENA]
¢þ
>WENV170645553
JNSK01000128
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
9909
9984
+
Pro
TGG
[ENA]
¢þ
>WENV170950726
MEHZ011513881
[MEHZ] marine metagenome; marine surface water
1328
1253
-
Pro
TGG
[ENA]
¢þ
>C181018691
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
724227
724302
+
Pro
TGG
-
¡û
>C181021050
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
905264
905189
-
Pro
TGG
-
¡û
>C181021087
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
900302
900227
-
Pro
TGG
-
¡û
>C181021199
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
902431
902356
-
Pro
TGG
-
¡û
>C181021312
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
875426
875351
-
Pro
TGG
-
¡û
>SRA1018960
SRR035082.377091
454 Sequencing (SRP001803)
250
325
+
Pro
TGG
[SRA]
>SRA1023476
SRR035084.106340
454 Sequencing (SRP001805)
259
184
-
Pro
TGG
[SRA]
>SRA1031348
SRR035087.415942
454 Sequencing (SRP001808)
40
115
+
Pro
TGG
[SRA]
>SRA1047093
SRR035093.453240
454 Sequencing (SRP001814)
76
151
+
Pro
TGG
[SRA]
>WENV061625
AACY023435684
Marine microbial communities from Global Ocean Sampling (GOS)
1087
1012
-
Pro
TGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK