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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.484439 (10 seq.)
>WENV183747429
PPCM01001916
[PPCM] marine sediment metagenome; marine sediment
4939
5014
+
Ala
TGC
[ENA]
¢þ
>WENV170607927
FUWD010871984
[FUWD] metagenome; unknown
92
167
+
Ala
TGC
[ENA]
¢þ
>C191001305
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
3344255
3344180
-
Ala
TGC
-
¡û
>C191001329
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
2858972
2858897
-
Ala
TGC
-
¡û
>C191001349
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
2857010
2856935
-
Ala
TGC
-
¡û
>C191001364
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
576717
576642
-
Ala
TGC
-
¡û
>C191001373
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
470943
470868
-
Ala
TGC
-
¡û
>SRA1031444
SRR035087.430869
454 Sequencing (SRP001808)
325
400
+
Ala
TGC
[SRA]
>SRA1031664
SRR035087.467446
454 Sequencing (SRP001808)
167
242
+
Ala
TGC
[SRA]
>SRA1050457
SRR035095.268101
454 Sequencing (SRP001816)
392
317
-
Ala
TGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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