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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485131 (24 seq.)
>W131106831
APFI01000024
Thermodesulfobacteriota
Desulfovibrio sp. Dsv1 [APFI]
31460
31533
+
Cys
GCA
[ENA]
¡û
>W131215424
ATUZ01000016
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 [ATUZ]
28019
27946
-
Cys
GCA
[ENA]
¡û
>WENV180962436
ODUN01011528
[ODUN] human metagenome; G_DNA_Stool
2240
2167
-
Cys
GCA
[ENA]
¢þ
>WENV181451175
OGDY01003134
[OGDY] metagenome; Human gut stool
165
92
-
Cys
GCA
[ENA]
¢þ
>WENV181714380
OGPR01001608
[OGPR] human gut metagenome; faeces
6599
6672
+
Cys
GCA
[ENA]
¢þ
>WENV181895869
OGXR01047209
[OGXR] human gut metagenome; faeces
67
140
+
Cys
GCA
[ENA]
¢þ
>WENV182596027
OJIY01000369
[OJIY] metagenome; faeces
7021
6948
-
Cys
GCA
[ENA]
¢þ
>WENV183223109
OLQM01006768
[OLQM] human gut metagenome; faeces
6935
6862
-
Cys
GCA
[ENA]
¢þ
>WENV183453976
OMDE01030399
[OMDE] human gut metagenome; feces
656
729
+
Cys
GCA
[ENA]
¢þ
>WENV183545417
OOAQ01003144
[OOAQ] human gut metagenome; human gut
4454
4527
+
Cys
GCA
[ENA]
¢þ
>WENV183775398
PPYF01065798
[PPYF] human gut metagenome; stool from patient with Crohn's disease
4088
4161
+
Cys
GCA
[ENA]
¢þ
>WENV170715535
LQAB01004660
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1989
1916
-
Cys
GCA
[ENA]
¢þ
>C181001542
AP017368
Thermodesulfobacteriota
Candidatus Desulfovibrio trichonymphae Rs-N31 [AP017368]
726297
726370
+
Cys
GCA
-
¡û
>C181081051
CP023415
Thermodesulfobacteriota
Desulfovibrio sp. G11 [CP023415]
2550138
2550211
+
Cys
GCA
-
¡û
>C191149721
CP036295
Thermodesulfobacteriota
Desulfovibrio desulfuricans IC1 [CP036295]
634198
634125
-
Cys
GCA
-
¡û
>W09118202
ACCT01000001
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 [ACCT]
686185
686258
+
Cys
GCA
[ENA]
¡û
>C09103866
CP001358
Thermodesulfobacteriota
Desulfovibrio desulfuricans [CP001358]
676508
676435
-
Cys
GCA
[Ensembl]
¡û
>W1810792957
QRJJ01000026
Thermodesulfobacteriota
Desulfovibrio sp. AM18-2 [QRJJ]
520
447
-
Cys
GCA
[ENA]
¡û
>W10111717
ADDR01000183
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
15381
15308
-
Cys
GCA
[ENA]
¡û
>W11107026
ACWM01000077
Thermodesulfobacteriota
Desulfovibrio sp. 6_1_46AFAA [ACWM]
103213
103140
-
Cys
GCA
[ENA]
¡û
>W11114644
ADDR01000183
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
15381
15308
-
Cys
GCA
[ENA]
¡û
>C161069010
CP014229
Thermodesulfobacteriota
Desulfovibrio fairfieldensis CCUG 45958 [CP014229]
515909
515836
-
Cys
GCA
[Ensembl]
¡û
>W1710515597
FNBX01000008
Thermodesulfobacteriota
Desulfovibrio legallii [FNBX]
13553
13480
-
Cys
GCA
[ENA]
¡û
>W1710579863
FPIW01000016
Thermodesulfobacteriota
Desulfovibrio desulfuricans [FPIW]
1141
1068
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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