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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485651 (38 seq.)
>C025659
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1764027
1764102
+
Glu
TTC
-
¡û
>C025780
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
1103791
1103866
+
Glu
TTC
[Ensembl]
¡û
>W141070780
ASGQ01000014
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
4691
4616
-
Glu
TTC
[ENA]
¡û
>W141082683
AUNF01000116
Thermotogota
Thermotoga sp. A7A [AUNF]
7409
7484
+
Glu
TTC
[ENA]
¡û
>WENV181408321
OGCH01001790
[OGCH] hot springs metagenome; hot springs
1095
1020
-
Glu
TTC
[ENA]
¢þ
>WENV181408367
OGCH01002162
[OGCH] hot springs metagenome; hot springs
1095
1020
-
Glu
TTC
[ENA]
¢þ
>C08010909
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1081751
1081679
-
Glu
TTC
[Ensembl]
¡û
>WENV170676185
LDZR01001451
[LDZR] terrestrial metagenome; oil reservoir sample K2
1059
1134
+
Glu
TTC
[ENA]
¢þ
>WENV170676537
LDZS01000971
[LDZS] terrestrial metagenome; oil reservoir sample K3
1650
1575
-
Glu
TTC
[ENA]
¢þ
>W09106553
AAWB01000008
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
10790
10865
+
Glu
TTC
[ENA]
¡û
>W09107421
ABIJ01000005
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
148383
148308
-
Glu
TTC
[ENA]
¡û
>W09112223
ABXR01000012
Thermotogota
Marinitoga piezophila KA3 [ABXR]
44087
44012
-
Glu
TTC
[ENA]
¡û
>C09110655
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
1143471
1143396
-
Glu
TTC
[Ensembl]
¡û
>C141011540
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
1051224
1051149
-
Glu
TTC
-
¡û
>W1910635470
LNDD01000005
Thermotogota
Thermotoga sp. SG1 [LNDD]
326992
326917
-
Glu
TTC
[ENA]
¡û
>W1910635486
LNDE01000001
Thermotogota
Thermotoga sp. KOL6 [LNDE]
690772
690697
-
Glu
TTC
[ENA]
¡û
>C151004285
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
1082324
1082249
-
Glu
TTC
[Ensembl]
¡û
>C151004331
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
1036254
1036179
-
Glu
TTC
[Ensembl]
¡û
>C151030639
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
1414205
1414130
-
Glu
TTC
[Ensembl]
¡û
>C151074619
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
1754014
1754089
+
Glu
TTC
[Ensembl]
¡û
>C151076973
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
1764042
1764117
+
Glu
TTC
[Ensembl]
¡û
>C151077019
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
1764042
1764117
+
Glu
TTC
[Ensembl]
¡û
>W10105848
ACXW01000007
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
26981
26906
-
Glu
TTC
[ENA]
¡û
>C10113511
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
1065840
1065765
-
Glu
TTC
[Ensembl]
¡û
>W11108168
ACXW01000007
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
26981
26906
-
Glu
TTC
[ENA]
¡û
>W11180803
AGIJ01000002
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
411541
411616
+
Glu
TTC
[ENA]
¡û
>W121062188
AJII01000009
Thermotogota
Thermotoga sp. EMP [AJII]
175990
175915
-
Glu
TTC
[ENA]
¡û
>C131012509
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
1764044
1764119
+
Glu
TTC
-
¡û
>W1610540319
JSFG01000003
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
1667
1592
-
Glu
TTC
[ENA]
¡û
>W1610540379
JSFH01000007
Thermotogota
Thermotoga sp. Mc24 [JSFH]
65115
65040
-
Glu
TTC
[ENA]
¡û
>W1610540411
JSFI01000003
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
1662
1587
-
Glu
TTC
[ENA]
¡û
>W1610540458
JSFJ01000002
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
104363
104438
+
Glu
TTC
[ENA]
¡û
>W1610612931
LGFG01000203
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
1059
1134
+
Glu
TTC
[ENA]
¡û
>W1710643340
JSFG01000003
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
1667
1592
-
Glu
TTC
[ENA]
¡û
>W1710643400
JSFH01000007
Thermotogota
Thermotoga sp. Mc24 [JSFH]
65115
65040
-
Glu
TTC
[ENA]
¡û
>W1710643432
JSFI01000003
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
1662
1587
-
Glu
TTC
[ENA]
¡û
>W1710643479
JSFJ01000002
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
104363
104438
+
Glu
TTC
[ENA]
¡û
>W1710734213
LGFG01000203
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
1059
1134
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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