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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485652 (39 seq.)
>C025662
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1536879
1536804
-
Arg
CCG
-
¡û
>C025782
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
1264554
1264629
+
Arg
CCG
[Ensembl]
¡û
>W141070779
ASGQ01000013
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
4248
4173
-
Arg
CCG
[ENA]
¡û
>W141082674
AUNF01000076
Thermotogota
Thermotoga sp. A7A [AUNF]
10098
10023
-
Arg
CCG
[ENA]
¡û
>WENV181407856
OGCH01000139
[OGCH] hot springs metagenome; hot springs
45910
45985
+
Arg
CCG
[ENA]
¢þ
>C08010906
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1240734
1240662
-
Arg
CCG
[Ensembl]
¡û
>WENV170676172
LDZR01001292
[LDZR] terrestrial metagenome; oil reservoir sample K2
9807
9732
-
Arg
CCG
[ENA]
¢þ
>WENV170676759
LDZS01002161
[LDZS] terrestrial metagenome; oil reservoir sample K3
522
597
+
Arg
CCG
[ENA]
¢þ
>W09106564
AAWB01000014
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
28015
27940
-
Arg
CCG
[ENA]
¡û
>W09107418
ABIJ01000004
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
156772
156697
-
Arg
CCG
[ENA]
¡û
>W09112216
ABXR01000011
Thermotogota
Marinitoga piezophila KA3 [ABXR]
116403
116478
+
Arg
CCG
[ENA]
¡û
>C09110656
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
1097797
1097722
-
Arg
CCG
[Ensembl]
¡û
>C141011523
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
1278372
1278447
+
Arg
CCG
-
¡û
>W1910635471
LNDD01000005
Thermotogota
Thermotoga sp. SG1 [LNDD]
284115
284040
-
Arg
CCG
[ENA]
¡û
>W1910635487
LNDE01000001
Thermotogota
Thermotoga sp. KOL6 [LNDE]
649321
649246
-
Arg
CCG
[ENA]
¡û
>C151004282
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
1225435
1225360
-
Arg
CCG
[Ensembl]
¡û
>C151004314
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
1262861
1262936
+
Arg
CCG
[Ensembl]
¡û
>C151030640
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
1370229
1370154
-
Arg
CCG
[Ensembl]
¡û
>C151074622
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
1526866
1526791
-
Arg
CCG
[Ensembl]
¡û
>C151076976
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
1536894
1536819
-
Arg
CCG
[Ensembl]
¡û
>C151077022
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
1536894
1536819
-
Arg
CCG
[Ensembl]
¡û
>W10105854
ACXW01000008
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
16852
16777
-
Arg
CCG
[ENA]
¡û
>C10113494
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
1287919
1287994
+
Arg
CCG
[Ensembl]
¡û
>W11108174
ACXW01000008
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
16852
16777
-
Arg
CCG
[ENA]
¡û
>W11180806
AGIJ01000002
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
184393
184318
-
Arg
CCG
[ENA]
¡û
>W121062204
AJII01000011
Thermotogota
Thermotoga sp. EMP [AJII]
106081
106006
-
Arg
CCG
[ENA]
¡û
>C131012512
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
1536896
1536821
-
Arg
CCG
-
¡û
>W1610540322
JSFG01000006
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
93327
93402
+
Arg
CCG
[ENA]
¡û
>W1610540385
JSFH01000008
Thermotogota
Thermotoga sp. Mc24 [JSFH]
17928
17853
-
Arg
CCG
[ENA]
¡û
>W1610540414
JSFI01000005
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
93115
93190
+
Arg
CCG
[ENA]
¡û
>W1610540500
JSFJ01000017
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
9360
9285
-
Arg
CCG
[ENA]
¡û
>W1610612918
LGFG01000044
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
9807
9732
-
Arg
CCG
[ENA]
¡û
>W1610613149
LGFM01000030
Thermotogota
Thermotoga sp. 47_83 [LGFM]
522
597
+
Arg
CCG
[ENA]
¡û
>W1710643343
JSFG01000006
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
93327
93402
+
Arg
CCG
[ENA]
¡û
>W1710643406
JSFH01000008
Thermotogota
Thermotoga sp. Mc24 [JSFH]
17928
17853
-
Arg
CCG
[ENA]
¡û
>W1710643435
JSFI01000005
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
93115
93190
+
Arg
CCG
[ENA]
¡û
>W1710643521
JSFJ01000017
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
9360
9285
-
Arg
CCG
[ENA]
¡û
>W1710734200
LGFG01000044
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
9807
9732
-
Arg
CCG
[ENA]
¡û
>W1710734356
LGFM01000030
Thermotogota
Thermotoga sp. 47_83 [LGFM]
522
597
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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