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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485655 (35 seq.)
>C025647
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1204148
1204223
+
Asn
GTT
-
¡û
>C025787
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
1563498
1563423
-
Asn
GTT
[Ensembl]
¡û
>W141070787
ASGQ01000018
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
92688
92613
-
Asn
GTT
[ENA]
¡û
>W141082654
AUNF01000020
Thermotogota
Thermotoga sp. A7A [AUNF]
109556
109481
-
Asn
GTT
[ENA]
¡û
>WENV181408179
OGCH01000892
[OGCH] hot springs metagenome; hot springs
496
421
-
Asn
GTT
[ENA]
¢þ
>C08010900
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1652139
1652067
-
Asn
GTT
[Ensembl]
¡û
>WENV170675695
LDZQ01000273
[LDZQ] terrestrial metagenome; oil reservoir sample I2
2072
1997
-
Asn
GTT
[ENA]
¢þ
>WENV170676161
LDZR01001276
[LDZR] terrestrial metagenome; oil reservoir sample K2
12226
12301
+
Asn
GTT
[ENA]
¢þ
>WENV170676749
LDZS01002146
[LDZS] terrestrial metagenome; oil reservoir sample K3
13662
13737
+
Asn
GTT
[ENA]
¢þ
>W09106544
AAWB01000002
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
90042
90117
+
Asn
GTT
[ENA]
¡û
>W09107401
ABIJ01000001
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
137064
136989
-
Asn
GTT
[ENA]
¡û
>W09112208
ABXR01000006
Thermotogota
Marinitoga piezophila KA3 [ABXR]
109758
109833
+
Asn
GTT
[ENA]
¡û
>C09110650
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
1357543
1357468
-
Asn
GTT
[Ensembl]
¡û
>C141011528
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
1611103
1611028
-
Asn
GTT
-
¡û
>W1910635457
LNDD01000004
Thermotogota
Thermotoga sp. SG1 [LNDD]
236428
236503
+
Asn
GTT
[ENA]
¡û
>C151004319
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
1547018
1546943
-
Asn
GTT
[Ensembl]
¡û
>C151030634
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
1614548
1614473
-
Asn
GTT
[Ensembl]
¡û
>C151074607
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
1204163
1204238
+
Asn
GTT
[Ensembl]
¡û
>C151076961
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
1204163
1204238
+
Asn
GTT
[Ensembl]
¡û
>C151077007
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
1204163
1204238
+
Asn
GTT
[Ensembl]
¡û
>W10105823
ACXW01000002
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
62994
63069
+
Asn
GTT
[ENA]
¡û
>C10113499
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
1581151
1581076
-
Asn
GTT
[Ensembl]
¡û
>W11108143
ACXW01000002
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
62994
63069
+
Asn
GTT
[ENA]
¡û
>W11180791
AGIJ01000001
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
129358
129283
-
Asn
GTT
[ENA]
¡û
>C131012497
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
1204164
1204239
+
Asn
GTT
-
¡û
>W1610540334
JSFG01000010
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
139232
139157
-
Asn
GTT
[ENA]
¡û
>W1610540424
JSFI01000007
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
182719
182644
-
Asn
GTT
[ENA]
¡û
>W1610540486
JSFJ01000015
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
99272
99347
+
Asn
GTT
[ENA]
¡û
>W1610612907
LGFG01000028
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
12226
12301
+
Asn
GTT
[ENA]
¡û
>W1610613139
LGFM01000015
Thermotogota
Thermotoga sp. 47_83 [LGFM]
13662
13737
+
Asn
GTT
[ENA]
¡û
>W1710643355
JSFG01000010
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
139232
139157
-
Asn
GTT
[ENA]
¡û
>W1710643445
JSFI01000007
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
182719
182644
-
Asn
GTT
[ENA]
¡û
>W1710643507
JSFJ01000015
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
99272
99347
+
Asn
GTT
[ENA]
¡û
>W1710734189
LGFG01000028
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
12226
12301
+
Asn
GTT
[ENA]
¡û
>W1710734346
LGFM01000015
Thermotogota
Thermotoga sp. 47_83 [LGFM]
13662
13737
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK