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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485656 (37 seq.)
>C025649
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1362394
1362469
+
Gly
CCC
-
¡û
>C025789
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
1429875
1429800
-
Gly
CCC
[Ensembl]
¡û
>W141070784
ASGQ01000015
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
57505
57430
-
Gly
CCC
[ENA]
¡û
>W141082651
AUNF01000018
Thermotogota
Thermotoga sp. A7A [AUNF]
65205
65130
-
Gly
CCC
[ENA]
¡û
>WENV181408575
OGCH01005770
[OGCH] hot springs metagenome; hot springs
968
893
-
Gly
CCC
[ENA]
¢þ
>C08010902
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1494316
1494244
-
Gly
CCC
[Ensembl]
¡û
>WENV170676182
LDZR01001336
[LDZR] terrestrial metagenome; oil reservoir sample K2
185
260
+
Gly
CCC
[ENA]
¢þ
>WENV170676779
LDZS01002322
[LDZS] terrestrial metagenome; oil reservoir sample K3
2024
1949
-
Gly
CCC
[ENA]
¢þ
>W09106548
AAWB01000003
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
52560
52485
-
Gly
CCC
[ENA]
¡û
>W09107425
ABIJ01000006
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
127170
127095
-
Gly
CCC
[ENA]
¡û
>C141011530
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
1452856
1452781
-
Gly
CCC
-
¡û
>C09110652
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
1209457
1209382
-
Gly
CCC
[Ensembl]
¡û
>W1910635459
LNDD01000004
Thermotogota
Thermotoga sp. SG1 [LNDD]
362792
362867
+
Gly
CCC
[ENA]
¡û
>C151004279
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
1470756
1470681
-
Gly
CCC
[Ensembl]
¡û
>C151004321
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
1421769
1421694
-
Gly
CCC
[Ensembl]
¡û
>C151030636
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
1480524
1480449
-
Gly
CCC
[Ensembl]
¡û
>C151074609
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
1352382
1352457
+
Gly
CCC
[Ensembl]
¡û
>C151076963
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
1362410
1362485
+
Gly
CCC
[Ensembl]
¡û
>C151077009
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
1362410
1362485
+
Gly
CCC
[Ensembl]
¡û
>W10105825
ACXW01000002
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
190018
190093
+
Gly
CCC
[ENA]
¡û
>C10113501
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
1454127
1454052
-
Gly
CCC
[Ensembl]
¡û
>W11108145
ACXW01000002
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
190018
190093
+
Gly
CCC
[ENA]
¡û
>W11180793
AGIJ01000002
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
9909
9984
+
Gly
CCC
[ENA]
¡û
>W121062201
AJII01000011
Thermotogota
Thermotoga sp. EMP [AJII]
351402
351327
-
Gly
CCC
[ENA]
¡û
>C131012499
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
1362412
1362487
+
Gly
CCC
-
¡û
>W1610540336
JSFG01000010
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
13973
13898
-
Gly
CCC
[ENA]
¡û
>W1610540392
JSFH01000009
Thermotogota
Thermotoga sp. Mc24 [JSFH]
162621
162546
-
Gly
CCC
[ENA]
¡û
>W1610540426
JSFI01000007
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
57460
57385
-
Gly
CCC
[ENA]
¡û
>W1610540488
JSFJ01000015
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
224530
224605
+
Gly
CCC
[ENA]
¡û
>W1610612928
LGFG01000088
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
185
260
+
Gly
CCC
[ENA]
¡û
>W1610613169
LGFM01000191
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2024
1949
-
Gly
CCC
[ENA]
¡û
>W1710643357
JSFG01000010
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
13973
13898
-
Gly
CCC
[ENA]
¡û
>W1710643413
JSFH01000009
Thermotogota
Thermotoga sp. Mc24 [JSFH]
162621
162546
-
Gly
CCC
[ENA]
¡û
>W1710643447
JSFI01000007
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
57460
57385
-
Gly
CCC
[ENA]
¡û
>W1710643509
JSFJ01000015
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
224530
224605
+
Gly
CCC
[ENA]
¡û
>W1710734210
LGFG01000088
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
185
260
+
Gly
CCC
[ENA]
¡û
>W1710734376
LGFM01000191
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2024
1949
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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