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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485657 (39 seq.)
>C025642
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
611420
611495
+
Thr
CGT
-
¡û
>C025811
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
322053
321978
-
Thr
CGT
[Ensembl]
¡û
>W141070748
ASGQ01000001
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
44464
44389
-
Thr
CGT
[ENA]
¡û
>W141082656
AUNF01000039
Thermotogota
Thermotoga sp. A7A [AUNF]
32442
32367
-
Thr
CGT
[ENA]
¡û
>WENV181408356
OGCH01002044
[OGCH] hot springs metagenome; hot springs
53
128
+
Thr
CGT
[ENA]
¢þ
>C08010922
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
342106
342034
-
Thr
CGT
[Ensembl]
¡û
>WENV170676159
LDZR01001269
[LDZR] terrestrial metagenome; oil reservoir sample K2
10117
10042
-
Thr
CGT
[ENA]
¢þ
>WENV170676748
LDZS01002141
[LDZS] terrestrial metagenome; oil reservoir sample K3
7328
7403
+
Thr
CGT
[ENA]
¢þ
>W09106565
AAWB01000017
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
28131
28056
-
Thr
CGT
[ENA]
¡û
>W09107434
ABIJ01000008
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
64337
64412
+
Thr
CGT
[ENA]
¡û
>W09112203
ABXR01000002
Thermotogota
Marinitoga piezophila KA3 [ABXR]
28348
28423
+
Thr
CGT
[ENA]
¡û
>C141011553
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
334194
334119
-
Thr
CGT
-
¡û
>W1910635448
LNDD01000003
Thermotogota
Thermotoga sp. SG1 [LNDD]
164114
164189
+
Thr
CGT
[ENA]
¡û
>W1910635506
LNDE01000002
Thermotogota
Thermotoga sp. KOL6 [LNDE]
377317
377392
+
Thr
CGT
[ENA]
¡û
>C09110674
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
75012
74937
-
Thr
CGT
[Ensembl]
¡û
>C151004298
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
339411
339336
-
Thr
CGT
[Ensembl]
¡û
>C151004344
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
333460
333385
-
Thr
CGT
[Ensembl]
¡û
>C151030658
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
352660
352585
-
Thr
CGT
[Ensembl]
¡û
>C151074602
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
611428
611503
+
Thr
CGT
[Ensembl]
¡û
>C151076956
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
611428
611503
+
Thr
CGT
[Ensembl]
¡û
>C151077002
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
611428
611503
+
Thr
CGT
[Ensembl]
¡û
>W10105836
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
188662
188737
+
Thr
CGT
[ENA]
¡û
>C10113483
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
367660
367735
+
Thr
CGT
[Ensembl]
¡û
>W11108156
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
188662
188737
+
Thr
CGT
[ENA]
¡û
>W11180786
AGIJ01000001
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
722093
722018
-
Thr
CGT
[ENA]
¡û
>W121062167
AJII01000002
Thermotogota
Thermotoga sp. EMP [AJII]
157483
157558
+
Thr
CGT
[ENA]
¡û
>C131012492
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
611429
611504
+
Thr
CGT
-
¡û
>W1610540341
JSFG01000013
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
21064
20989
-
Thr
CGT
[ENA]
¡û
>W1610540407
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
173327
173252
-
Thr
CGT
[ENA]
¡û
>W1610540443
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
152299
152224
-
Thr
CGT
[ENA]
¡û
>W1610540476
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
186851
186926
+
Thr
CGT
[ENA]
¡û
>W1610612905
LGFG01000021
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
10117
10042
-
Thr
CGT
[ENA]
¡û
>W1610613138
LGFM01000010
Thermotogota
Thermotoga sp. 47_83 [LGFM]
7328
7403
+
Thr
CGT
[ENA]
¡û
>W1710643362
JSFG01000013
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
21064
20989
-
Thr
CGT
[ENA]
¡û
>W1710643428
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
173327
173252
-
Thr
CGT
[ENA]
¡û
>W1710643464
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
152299
152224
-
Thr
CGT
[ENA]
¡û
>W1710643497
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
186851
186926
+
Thr
CGT
[ENA]
¡û
>W1710734187
LGFG01000021
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
10117
10042
-
Thr
CGT
[ENA]
¡û
>W1710734345
LGFM01000010
Thermotogota
Thermotoga sp. 47_83 [LGFM]
7328
7403
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK