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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485661 (36 seq.)
>C025639
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
474199
474274
+
Thr
TGT
-
¡û
>C025808
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
461310
461235
-
Thr
TGT
[Ensembl]
¡û
>W141070756
ASGQ01000003
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
91075
91000
-
Thr
TGT
[ENA]
¡û
>WENV181408957
OGCH01027546
[OGCH] hot springs metagenome; hot springs
697
622
-
Thr
TGT
[ENA]
¢þ
>C08010919
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
479371
479299
-
Thr
TGT
[Ensembl]
¡û
>WENV170676169
LDZR01001290
[LDZR] terrestrial metagenome; oil reservoir sample K2
5860
5935
+
Thr
TGT
[ENA]
¢þ
>WENV170676754
LDZS01002155
[LDZS] terrestrial metagenome; oil reservoir sample K3
7572
7647
+
Thr
TGT
[ENA]
¢þ
>W09106569
AAWB01000023
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
29666
29591
-
Thr
TGT
[ENA]
¡û
>W09107437
ABIJ01000010
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
27832
27757
-
Thr
TGT
[ENA]
¡û
>W09112229
ABXR01000015
Thermotogota
Marinitoga piezophila KA3 [ABXR]
51044
51119
+
Thr
TGT
[ENA]
¡û
>C141011550
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
471418
471343
-
Thr
TGT
-
¡û
>W1910635503
LNDE01000002
Thermotogota
Thermotoga sp. KOL6 [LNDE]
242765
242840
+
Thr
TGT
[ENA]
¡û
>C09110671
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
214634
214559
-
Thr
TGT
[Ensembl]
¡û
>C151004295
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
479234
479159
-
Thr
TGT
[Ensembl]
¡û
>C151004341
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
470725
470650
-
Thr
TGT
[Ensembl]
¡û
>C151074599
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
474204
474279
+
Thr
TGT
[Ensembl]
¡û
>C151076953
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
474204
474279
+
Thr
TGT
[Ensembl]
¡û
>C151076999
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
474204
474279
+
Thr
TGT
[Ensembl]
¡û
>W10105833
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
49468
49543
+
Thr
TGT
[ENA]
¡û
>C10113480
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
228468
228543
+
Thr
TGT
[Ensembl]
¡û
>W11108153
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
49468
49543
+
Thr
TGT
[ENA]
¡û
>W11180783
AGIJ01000001
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
859317
859242
-
Thr
TGT
[ENA]
¡û
>W121062164
AJII01000002
Thermotogota
Thermotoga sp. EMP [AJII]
17661
17736
+
Thr
TGT
[ENA]
¡û
>C131012489
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
474204
474279
+
Thr
TGT
-
¡û
>W1610540349
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
51992
51917
-
Thr
TGT
[ENA]
¡û
>W1610540404
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
313211
313136
-
Thr
TGT
[ENA]
¡û
>W1610540440
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
289559
289484
-
Thr
TGT
[ENA]
¡û
>W1610540473
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49585
49660
+
Thr
TGT
[ENA]
¡û
>W1610612915
LGFG01000042
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
5860
5935
+
Thr
TGT
[ENA]
¡û
>W1610613144
LGFM01000024
Thermotogota
Thermotoga sp. 47_83 [LGFM]
7572
7647
+
Thr
TGT
[ENA]
¡û
>W1710643370
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
51992
51917
-
Thr
TGT
[ENA]
¡û
>W1710643425
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
313211
313136
-
Thr
TGT
[ENA]
¡û
>W1710643461
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
289559
289484
-
Thr
TGT
[ENA]
¡û
>W1710643494
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49585
49660
+
Thr
TGT
[ENA]
¡û
>W1710734197
LGFG01000042
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
5860
5935
+
Thr
TGT
[ENA]
¡û
>W1710734351
LGFM01000024
Thermotogota
Thermotoga sp. 47_83 [LGFM]
7572
7647
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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