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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485663 (38 seq.)
>C025672
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
206481
206406
-
Gly
TCC
-
¡û
>C025775
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
737048
737123
+
Gly
TCC
[Ensembl]
¡û
>W141070759
ASGQ01000004
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
217342
217417
+
Gly
TCC
[ENA]
¡û
>W141082667
AUNF01000052
Thermotogota
Thermotoga sp. A7A [AUNF]
17084
17009
-
Gly
TCC
[ENA]
¡û
>WENV181407964
OGCH01000294
[OGCH] hot springs metagenome; hot springs
10714
10639
-
Gly
TCC
[ENA]
¢þ
>C08010886
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
772733
772808
+
Gly
TCC
[Ensembl]
¡û
>WENV170676174
LDZR01001299
[LDZR] terrestrial metagenome; oil reservoir sample K2
4565
4640
+
Gly
TCC
[ENA]
¢þ
>WENV170676769
LDZS01002199
[LDZS] terrestrial metagenome; oil reservoir sample K3
2684
2759
+
Gly
TCC
[ENA]
¢þ
>W09106561
AAWB01000011
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
56178
56103
-
Gly
TCC
[ENA]
¡û
>W09107406
ABIJ01000003
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
34785
34860
+
Gly
TCC
[ENA]
¡û
>W09112237
ABXR01000030
Thermotogota
Marinitoga piezophila KA3 [ABXR]
35210
35285
+
Gly
TCC
[ENA]
¡û
>C141011517
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
739138
739213
+
Gly
TCC
-
¡û
>C09110632
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
489234
489309
+
Gly
TCC
[Ensembl]
¡û
>W1910635432
LNDD01000001
Thermotogota
Thermotoga sp. SG1 [LNDD]
252768
252843
+
Gly
TCC
[ENA]
¡û
>C151004262
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
777500
777575
+
Gly
TCC
[Ensembl]
¡û
>C151004308
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
722157
722232
+
Gly
TCC
[Ensembl]
¡û
>C151030622
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
766527
766602
+
Gly
TCC
[Ensembl]
¡û
>C151074632
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
206484
206409
-
Gly
TCC
[Ensembl]
¡û
>C151076986
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
206484
206409
-
Gly
TCC
[Ensembl]
¡û
>C151077032
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
206484
206409
-
Gly
TCC
[Ensembl]
¡û
>W10105819
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
203597
203522
-
Gly
TCC
[ENA]
¡û
>C10113512
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
857774
857699
-
Gly
TCC
[Ensembl]
¡û
>W11108139
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
203597
203522
-
Gly
TCC
[ENA]
¡û
>W11180819
AGIJ01000003
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
203301
203226
-
Gly
TCC
[ENA]
¡û
>W121062176
AJII01000007
Thermotogota
Thermotoga sp. EMP [AJII]
205302
205377
+
Gly
TCC
[ENA]
¡û
>C131012522
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
206484
206409
-
Gly
TCC
-
¡û
>W1610540352
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
166486
166561
+
Gly
TCC
[ENA]
¡û
>W1610540365
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
93425
93500
+
Gly
TCC
[ENA]
¡û
>W1610540444
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
154759
154834
+
Gly
TCC
[ENA]
¡û
>W1610540467
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
89147
89072
-
Gly
TCC
[ENA]
¡û
>W1610612920
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
4565
4640
+
Gly
TCC
[ENA]
¡û
>W1610613159
LGFM01000068
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2684
2759
+
Gly
TCC
[ENA]
¡û
>W1710643373
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
166486
166561
+
Gly
TCC
[ENA]
¡û
>W1710643386
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
93425
93500
+
Gly
TCC
[ENA]
¡û
>W1710643465
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
154759
154834
+
Gly
TCC
[ENA]
¡û
>W1710643488
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
89147
89072
-
Gly
TCC
[ENA]
¡û
>W1710734202
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
4565
4640
+
Gly
TCC
[ENA]
¡û
>W1710734366
LGFM01000068
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2684
2759
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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