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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485664 (39 seq.)
>C025674
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
206306
206231
-
His
GTG
-
¡û
>C025777
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
737222
737297
+
His
GTG
[Ensembl]
¡û
>W141070761
ASGQ01000004
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
217516
217591
+
His
GTG
[ENA]
¡û
>W141082669
AUNF01000052
Thermotogota
Thermotoga sp. A7A [AUNF]
16909
16834
-
His
GTG
[ENA]
¡û
>WENV181407966
OGCH01000294
[OGCH] hot springs metagenome; hot springs
10539
10464
-
His
GTG
[ENA]
¢þ
>C08010888
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
772908
772983
+
His
GTG
[Ensembl]
¡û
>WENV170676176
LDZR01001299
[LDZR] terrestrial metagenome; oil reservoir sample K2
4740
4815
+
His
GTG
[ENA]
¢þ
>WENV170676771
LDZS01002199
[LDZS] terrestrial metagenome; oil reservoir sample K3
2860
2935
+
His
GTG
[ENA]
¢þ
>W09106562
AAWB01000011
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
56004
55929
-
His
GTG
[ENA]
¡û
>W09107408
ABIJ01000003
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
34960
35035
+
His
GTG
[ENA]
¡û
>W09112239
ABXR01000030
Thermotogota
Marinitoga piezophila KA3 [ABXR]
35384
35459
+
His
GTG
[ENA]
¡û
>C141011519
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
739313
739388
+
His
GTG
-
¡û
>C09110634
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
489408
489483
+
His
GTG
[Ensembl]
¡û
>C09110636
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
489577
489652
+
His
GTG
[Ensembl]
¡û
>W1910635434
LNDD01000001
Thermotogota
Thermotoga sp. SG1 [LNDD]
252942
253017
+
His
GTG
[ENA]
¡û
>W1910635519
LNDE01000003
Thermotogota
Thermotoga sp. KOL6 [LNDE]
155316
155241
-
His
GTG
[ENA]
¡û
>C151004264
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
777675
777750
+
His
GTG
[Ensembl]
¡û
>C151030624
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
766701
766776
+
His
GTG
[Ensembl]
¡û
>C151074634
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
206309
206234
-
His
GTG
[Ensembl]
¡û
>C151076988
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
206309
206234
-
His
GTG
[Ensembl]
¡û
>C151077034
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
206309
206234
-
His
GTG
[Ensembl]
¡û
>W10105821
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
203423
203348
-
His
GTG
[ENA]
¡û
>C10113514
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
857600
857525
-
His
GTG
[Ensembl]
¡û
>W11108141
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
203423
203348
-
His
GTG
[ENA]
¡û
>W11180821
AGIJ01000003
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
203126
203051
-
His
GTG
[ENA]
¡û
>W121062178
AJII01000007
Thermotogota
Thermotoga sp. EMP [AJII]
205477
205552
+
His
GTG
[ENA]
¡û
>C131012524
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
206309
206234
-
His
GTG
-
¡û
>W1610540354
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
166661
166736
+
His
GTG
[ENA]
¡û
>W1610540367
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
93599
93674
+
His
GTG
[ENA]
¡û
>W1610540446
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
154934
155009
+
His
GTG
[ENA]
¡û
>W1610540469
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
88972
88897
-
His
GTG
[ENA]
¡û
>W1610612922
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
4740
4815
+
His
GTG
[ENA]
¡û
>W1610613161
LGFM01000068
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2860
2935
+
His
GTG
[ENA]
¡û
>W1710643375
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
166661
166736
+
His
GTG
[ENA]
¡û
>W1710643388
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
93599
93674
+
His
GTG
[ENA]
¡û
>W1710643467
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
154934
155009
+
His
GTG
[ENA]
¡û
>W1710643490
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
88972
88897
-
His
GTG
[ENA]
¡û
>W1710734204
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
4740
4815
+
His
GTG
[ENA]
¡û
>W1710734368
LGFM01000068
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2860
2935
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK