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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485666 (30 seq.)
>C025633
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
202305
202380
+
Ala
CGC
-
¡û
>W141070765
ASGQ01000004
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
218134
218059
-
Ala
CGC
[ENA]
¡û
>W141082664
AUNF01000052
Thermotogota
Thermotoga sp. A7A [AUNF]
12909
12984
+
Ala
CGC
[ENA]
¡û
>WENV181407961
OGCH01000294
[OGCH] hot springs metagenome; hot springs
6538
6613
+
Ala
CGC
[ENA]
¢þ
>C08010913
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
776909
776837
-
Ala
CGC
[Ensembl]
¡û
>WENV170676178
LDZR01001299
[LDZR] terrestrial metagenome; oil reservoir sample K2
8741
8666
-
Ala
CGC
[ENA]
¢þ
>WENV170676782
LDZS01002342
[LDZS] terrestrial metagenome; oil reservoir sample K3
641
716
+
Ala
CGC
[ENA]
¢þ
>W09107413
ABIJ01000003
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
38961
38886
-
Ala
CGC
[ENA]
¡û
>C09110665
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
490195
490120
-
Ala
CGC
[Ensembl]
¡û
>C141011544
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
743314
743239
-
Ala
CGC
-
¡û
>W1910635439
LNDD01000001
Thermotogota
Thermotoga sp. SG1 [LNDD]
253559
253484
-
Ala
CGC
[ENA]
¡û
>C151004289
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
781676
781601
-
Ala
CGC
[Ensembl]
¡û
>C151004335
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
726333
726258
-
Ala
CGC
[Ensembl]
¡û
>C151030649
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
767319
767244
-
Ala
CGC
[Ensembl]
¡û
>C151074593
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
202308
202383
+
Ala
CGC
[Ensembl]
¡û
>C151076947
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
202308
202383
+
Ala
CGC
[Ensembl]
¡û
>C151076993
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
202308
202383
+
Ala
CGC
[Ensembl]
¡û
>W11180814
AGIJ01000003
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
199125
199200
+
Ala
CGC
[ENA]
¡û
>W121062183
AJII01000007
Thermotogota
Thermotoga sp. EMP [AJII]
209478
209403
-
Ala
CGC
[ENA]
¡û
>C131012483
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
202308
202383
+
Ala
CGC
-
¡û
>W1610540359
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
170662
170587
-
Ala
CGC
[ENA]
¡û
>W1610540451
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
158935
158860
-
Ala
CGC
[ENA]
¡û
>W1610540463
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
84971
85046
+
Ala
CGC
[ENA]
¡û
>W1610612924
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
8741
8666
-
Ala
CGC
[ENA]
¡û
>W1610613172
LGFM01000211
Thermotogota
Thermotoga sp. 47_83 [LGFM]
641
716
+
Ala
CGC
[ENA]
¡û
>W1710643380
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
170662
170587
-
Ala
CGC
[ENA]
¡û
>W1710643472
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
158935
158860
-
Ala
CGC
[ENA]
¡û
>W1710643484
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
84971
85046
+
Ala
CGC
[ENA]
¡û
>W1710734206
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
8741
8666
-
Ala
CGC
[ENA]
¡û
>W1710734379
LGFM01000211
Thermotogota
Thermotoga sp. 47_83 [LGFM]
641
716
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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