This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.486347 (45 seq.)
>W1710804087
LJYY01000067
Bacillota
Lysinibacillus sphaericus [LJYY]
66929
66856
-
Cys
GCA
[ENA]
¡û
>W131044873
AMQZ01000024
Bacillota
Lysinibacillus fusiformis ZB2 [AMQZ]
468
541
+
Cys
GCA
[ENA]
¡û
>W131171218
ARGB01000003
Bacillota
Siminovitchia fordii DSM 16014 [ARGB]
1269
1342
+
Cys
GCA
[ENA]
¡û
>W131225521
AUDQ01000009
Bacillota
Sporosarcina ureae DSM 2281 [AUDQ]
141459
141389
-
Cys
GCA
[ENA]
¡û
>W1711706595
MSRF01000185
Bacillota
Bacillus sp. VT-16-64 [MSRF]
1380
1453
+
Cys
GCA
[ENA]
¡û
>C171035492
CP015108
Bacillota
Sporosarcina ureae S204 [CP015108]
1181123
1181053
-
Cys
GCA
-
¡û
>C171035560
CP015109
Bacillota
Sporosarcina ureae P17a [CP015109]
1192894
1192824
-
Cys
GCA
-
¡û
>C171037721
CP015348
Bacillota
Sporosarcina ureae P32a [CP015348]
1127966
1127896
-
Cys
GCA
-
¡û
>C171037789
CP015349
Bacillota
Sporosarcina sp. P37 [CP015349]
1071465
1071392
-
Cys
GCA
-
¡û
>WENV170966097
MTEX01001363
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
377
304
-
Cys
GCA
[ENA]
¢þ
>C181125151
CP026007
Bacillota
Lysinibacillus sp. YS11 [CP026007]
3869932
3869859
-
Cys
GCA
-
¡û
>C191089410
CP032418
Bacillota
Paenisporosarcina cavernae K2R23-3 [CP032418]
1973422
1973349
-
Cys
GCA
-
¡û
>C191206952
LR134328
Bacillota
Bacillus freudenreichii NCTC4823 [LR134328]
3005018
3004945
-
Cys
GCA
-
¡û
>W1911801971
QYTU02000074
Bacillota
Siminovitchia fortis DSM 16012 [QYTU]
3880
3807
-
Cys
GCA
[ENA]
¡û
>W1911802021
QYTV02000003
Bacillota
Siminovitchia acidinfaciens 2003/2/2 [QYTV]
1373
1446
+
Cys
GCA
[ENA]
¡û
>W1911802063
QYTW02000013
Bacillota
Siminovitchia terrae LMG 29736 [QYTW]
126581
126508
-
Cys
GCA
[ENA]
¡û
>W1810066976
PDYM01000039
Bacillota
Sporosarcina sp. P13 [PDYM]
29463
29390
-
Cys
GCA
[ENA]
¡û
>W1810067134
PDYP01000038
Bacillota
Sporosarcina sp. P17b [PDYP]
486
416
-
Cys
GCA
[ENA]
¡û
>W1810067509
PDYW01000057
Bacillota
Sporosarcina sp. P26b [PDYW]
505
435
-
Cys
GCA
[ENA]
¡û
>W1810067661
PDYZ01000028
Bacillota
Sporosarcina sp. P30 [PDYZ]
1705
1775
+
Cys
GCA
[ENA]
¡û
>W1810067882
PDZD01000054
Bacillota
Sporosarcina sp. P35 [PDZD]
2617
2544
-
Cys
GCA
[ENA]
¡û
>W1810067930
PDZE01000009
Bacillota
Sporosarcina sp. P3 [PDZE]
925
995
+
Cys
GCA
[ENA]
¡û
>W1810389730
PXXX01000016
Bacillota
Lysinibacillus capsici PB300 [PXXX]
1481
1554
+
Cys
GCA
[ENA]
¡û
>W10115355
ADJR01000045
Bacillota
Lysinibacillus fusiformis ZC1 [ADJR]
69574
69501
-
Cys
GCA
[ENA]
¡û
>W1510562107
CTDY01000012
Bacillota
Bacillus niameyensis SIT3 [CTDY]
110289
110216
-
Cys
GCA
[ENA]
¡û
>W1511316249
JPVR01000060
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [JPVR]
67896
67823
-
Cys
GCA
[ENA]
¡û
>W11118941
ADJR01000045
Bacillota
Lysinibacillus fusiformis ZC1 [ADJR]
69574
69501
-
Cys
GCA
[ENA]
¡û
>W1511479280
JWIB01000014
Bacillota
Sporosarcina sp. ZBG7A [JWIB]
71538
71465
-
Cys
GCA
[ENA]
¡û
>W1511640635
LDUJ01000009
Bacillota
Lysinibacillus sp. LK3 [LDUJ]
73438
73365
-
Cys
GCA
[ENA]
¡û
>W1511694878
LGCI01000006
Bacillota
Lysinibacillus macroides DSM 54 [LGCI]
330396
330323
-
Cys
GCA
[ENA]
¡û
>W11170964
AFPZ01000134
Bacillota
Sporosarcina newyorkensis 2681 [AFPZ]
505
432
-
Cys
GCA
[ENA]
¡û
>W121070939
AJXM01000031
Bacillota
Lysinibacillus boronitolerans F1182 [AJXM]
164
237
+
Cys
GCA
[ENA]
¡û
>W1610046535
BBCN01000020
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [BBCN]
67733
67660
-
Cys
GCA
[ENA]
¡û
>W1610047558
BBDJ01000043
Bacillota
Lysinibacillus pakistanensis [BBDJ]
1480
1553
+
Cys
GCA
[ENA]
¡û
>W1610587362
LDJR01000034
Bacillota
Lederbergia galactosidilytica galactosidilyticus [LDJR]
3943
4016
+
Cys
GCA
[ENA]
¡û
>W1610616521
LGPB01000122
Bacillota
Lederbergia galactosidilytica galactosidilyticus [LGPB]
41372
41299
-
Cys
GCA
[ENA]
¡û
>W1610616602
LGPD01000001
Bacillota
Virgibacillus soli [LGPD]
1238
1311
+
Cys
GCA
[ENA]
¡û
>W1610667944
LJYY01000067
Bacillota
Lysinibacillus sphaericus [LJYY]
66929
66856
-
Cys
GCA
[ENA]
¡û
>W1710022823
AVCW01000022
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [AVCW]
67896
67823
-
Cys
GCA
[ENA]
¡û
>W1710043308
BBCN01000020
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [BBCN]
67733
67660
-
Cys
GCA
[ENA]
¡û
>W1710044163
BBDJ01000043
Bacillota
Lysinibacillus pakistanensis [BBDJ]
1480
1553
+
Cys
GCA
[ENA]
¡û
>W1710602653
FUYJ01000005
Bacillota
Sporosarcina newyorkensis [FUYJ]
1966
2039
+
Cys
GCA
[ENA]
¡û
>W1710706492
LDJR01000034
Bacillota
Lederbergia galactosidilytica galactosidilyticus [LDJR]
3943
4016
+
Cys
GCA
[ENA]
¡û
>W1710741656
LGPB01000122
Bacillota
Lederbergia galactosidilytica galactosidilyticus [LGPB]
41372
41299
-
Cys
GCA
[ENA]
¡û
>W1710741737
LGPD01000001
Bacillota
Virgibacillus soli [LGPD]
1238
1311
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK