This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.486352 (24 seq.)
>W1710806102
LKAQ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
816067
815992
-
Ala
GGC
[ENA]
¡û
>W1710806141
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
75892
75817
-
Ala
GGC
[ENA]
¡û
>W131161012
AQXE01000007
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
132204
132279
+
Ala
GGC
[ENA]
¡û
>C007545
CP000112
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [CP000112]
3713115
3713040
-
Ala
GGC
[Ensembl]
¡û
>WENV181638867
OGNC01023585
[OGNC] metagenome; Human gut stool
826
751
-
Ala
GGC
[ENA]
¢þ
>W141169753
AXWQ01000001
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis DSM 16109 [AXWQ]
125578
125653
+
Ala
GGC
[ENA]
¡û
>W141169798
AXWQ01000011
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis DSM 16109 [AXWQ]
30888
30813
-
Ala
GGC
[ENA]
¡û
>WENV183707705
PDWI01010041
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1260
1185
-
Ala
GGC
[ENA]
¢þ
>WENV170112592
CEGF01005316
[CEGF] microbial mat metagenome; grass silage
701
626
-
Ala
GGC
[ENA]
¢þ
>WENV170418527
CEUM01048080
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1351
1426
+
Ala
GGC
[ENA]
¢þ
>WENV170419413
CEUM01125723
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
17990
17915
-
Ala
GGC
[ENA]
¢þ
>WENV170436957
CEUU01004821
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1367
1442
+
Ala
GGC
[ENA]
¢þ
>WENV170657071
JTFO01076824
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
192
267
+
Ala
GGC
[ENA]
¢þ
>WENV170891261
MDTD01021398
[MDTD] marine metagenome; seawater
1302
1377
+
Ala
GGC
[ENA]
¢þ
>WENV170892865
MDTD01043965
[MDTD] marine metagenome; seawater
3017
2942
-
Ala
GGC
[ENA]
¢þ
>W09100664
AABN02000001
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [AABN]
137206
137281
+
Ala
GGC
[ENA]
¡û
>W11149126
AEUJ01000003
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
598147
598072
-
Ala
GGC
[ENA]
¡û
>W11149127
AEUJ01000003
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
390008
389933
-
Ala
GGC
[ENA]
¡û
>C121009001
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
1607781
1607706
-
Ala
GGC
[Ensembl]
¡û
>C121009002
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
1399642
1399567
-
Ala
GGC
[Ensembl]
¡û
>C161068243
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
1479620
1479695
+
Ala
GGC
[Ensembl]
¡û
>C161068244
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
1683527
1683602
+
Ala
GGC
[Ensembl]
¡û
>W1710602281
FUYC01000001
Thermodesulfobacteriota
Paucidesulfovibrio gracilis DSM 16080 [FUYC]
191903
191828
-
Ala
GGC
[ENA]
¡û
>W1710602283
FUYC01000002
Thermodesulfobacteriota
Paucidesulfovibrio gracilis DSM 16080 [FUYC]
83792
83867
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK