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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.487621 (63 seq.)
>W1711167231
LVWD01000010
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
19786
19861
+
Gly
GCC
[ENA]
¡û
>W1711167236
LVWD01000013
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
549791
549716
-
Gly
GCC
[ENA]
¡û
>W1711167242
LVWD01000017
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
118
193
+
Gly
GCC
[ENA]
¡û
>W1711394913
MESO01000007
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_65_23 [MESO]
46315
46240
-
Gly
GCC
[ENA]
¡û
>W1711394932
MESO01000041
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_65_23 [MESO]
141
216
+
Gly
GCC
[ENA]
¡û
>W1711394957
MESO01000060
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_65_23 [MESO]
94219
94144
-
Gly
GCC
[ENA]
¡û
>W1711394961
MESO01000061
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_65_23 [MESO]
159302
159227
-
Gly
GCC
[ENA]
¡û
>W1711394971
MESO01000069
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_65_23 [MESO]
361
286
-
Gly
GCC
[ENA]
¡û
>C171063206
CP017476
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [CP017476]
4620230
4620155
-
Gly
GCC
-
¡û
>C171063215
CP017476
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [CP017476]
2925613
2925538
-
Gly
GCC
-
¡û
>WENV180365927
OBOC01069675
[OBOC] marine metagenome; ocean water
140
65
-
Gly
GCC
[ENA]
¢þ
>WENV181227773
OFDN01041864
[OFDN] hot springs metagenome; Water
1197
1122
-
Gly
GCC
[ENA]
¢þ
>WENV181368046
OFQG01000347
[OFQG] freshwater metagenome; Freshwater Lake
315
240
-
Gly
GCC
[ENA]
¢þ
>WENV181384814
OFRI01012337
[OFRI] wastewater metagenome; Exp Tend VB 90WW
875
950
+
Gly
GCC
[ENA]
¢þ
>WENV181391977
OFRV01001085
[OFRV] freshwater metagenome; Freshwater Lake
1258
1183
-
Gly
GCC
[ENA]
¢þ
>C08005942
CP001013
Betaproteobacteria
Leptothrix cholodnii SP-6 [CP001013]
4482041
4481969
-
Gly
GCC
[Ensembl]
¡û
>C08005950
CP001013
Betaproteobacteria
Leptothrix cholodnii SP-6 [CP001013]
2770526
2770454
-
Gly
GCC
[Ensembl]
¡û
>C08005952
CP001013
Betaproteobacteria
Leptothrix cholodnii SP-6 [CP001013]
2770275
2770203
-
Gly
GCC
[Ensembl]
¡û
>WENV170639655
JFJP01005676
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
14371
14296
-
Gly
GCC
[ENA]
¢þ
>WENV170658337
JTFP01089344
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
8
83
+
Gly
GCC
[ENA]
¢þ
>WENV170705541
LNAO01002103
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
385
310
-
Gly
GCC
[ENA]
¢þ
>WENV170706898
LNAP01008542
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8170
8095
-
Gly
GCC
[ENA]
¢þ
>WENV170707225
LNAP01015566
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5130
5055
-
Gly
GCC
[ENA]
¢þ
>WENV170707558
LNAP01025364
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
15909
15984
+
Gly
GCC
[ENA]
¢þ
>WENV170708438
LNAP01082209
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
378
303
-
Gly
GCC
[ENA]
¢þ
>WENV170713057
LNFM01023121
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
10365
10290
-
Gly
GCC
[ENA]
¢þ
>WENV170713775
LNFM01041630
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1412
1487
+
Gly
GCC
[ENA]
¢þ
>C191163878
CP039252
Betaproteobacteria
Hydrogenophaga sp. PAMC20947 [CP039252]
662841
662916
+
Gly
GCC
-
¡û
>C191163897
CP039252
Betaproteobacteria
Hydrogenophaga sp. PAMC20947 [CP039252]
3403305
3403230
-
Gly
GCC
-
¡û
>W141557835
JHVM01000001
Betaproteobacteria
Deefgea rivuli DSM 18356 [JHVM]
371802
371877
+
Gly
GCC
[ENA]
¡û
>W141557842
JHVM01000002
Betaproteobacteria
Deefgea rivuli DSM 18356 [JHVM]
2
77
+
Gly
GCC
[ENA]
¡û
>W1910699712
MERU01000004
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240 [MERU]
14065
13990
-
Gly
GCC
[ENA]
¡û
>W1910699714
MERU01000004
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240 [MERU]
9560
9485
-
Gly
GCC
[ENA]
¡û
>W1910699932
MESA01000034
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_63_20 [MESA]
28443
28518
+
Gly
GCC
[ENA]
¡û
>W1910699934
MESA01000034
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_63_20 [MESA]
28653
28728
+
Gly
GCC
[ENA]
¡û
>W1910699935
MESA01000034
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_63_20 [MESA]
29177
29252
+
Gly
GCC
[ENA]
¡û
>W1910700303
MESK01000001
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 [MESK]
27087
27162
+
Gly
GCC
[ENA]
¡û
>W1910700305
MESK01000001
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 [MESK]
27297
27372
+
Gly
GCC
[ENA]
¡û
>W1910700306
MESK01000001
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 [MESK]
27821
27896
+
Gly
GCC
[ENA]
¡û
>W1911279062
NTGB01000001
Betaproteobacteria
Polynucleobacter rarus MT-CBb6A5 [NTGB]
1399184
1399109
-
Gly
GCC
[ENA]
¡û
>W1911647513
QAJN01000018
Betaproteobacteria
Paucibacter sp. KBW04 [QAJN]
186952
187027
+
Gly
GCC
[ENA]
¡û
>W1810354966
PVLQ01000008
Betaproteobacteria
Malikia granosa P1 [PVLQ]
121806
121881
+
Gly
GCC
[ENA]
¡û
>W1810354994
PVLQ01000027
Betaproteobacteria
Malikia granosa P1 [PVLQ]
136083
136008
-
Gly
GCC
[ENA]
¡û
>W1810354996
PVLQ01000032
Betaproteobacteria
Malikia granosa P1 [PVLQ]
20404
20329
-
Gly
GCC
[ENA]
¡û
>W1810355008
PVLQ01000061
Betaproteobacteria
Malikia granosa P1 [PVLQ]
6361
6436
+
Gly
GCC
[ENA]
¡û
>W1810355021
PVLQ01000114
Betaproteobacteria
Malikia granosa P1 [PVLQ]
10384
10309
-
Gly
GCC
[ENA]
¡û
>W1810355043
PVLR01000015
Betaproteobacteria
Malikia spinosa 83 [PVLR]
75556
75481
-
Gly
GCC
[ENA]
¡û
>W1810355055
PVLR01000024
Betaproteobacteria
Malikia spinosa 83 [PVLR]
2769
2694
-
Gly
GCC
[ENA]
¡û
>W1810355056
PVLR01000024
Betaproteobacteria
Malikia spinosa 83 [PVLR]
283
208
-
Gly
GCC
[ENA]
¡û
>W1810355061
PVLR01000032
Betaproteobacteria
Malikia spinosa 83 [PVLR]
23737
23662
-
Gly
GCC
[ENA]
¡û
>W1810355073
PVLR01000039
Betaproteobacteria
Malikia spinosa 83 [PVLR]
235
310
+
Gly
GCC
[ENA]
¡û
>W1810355081
PVLR01000057
Betaproteobacteria
Malikia spinosa 83 [PVLR]
1213
1288
+
Gly
GCC
[ENA]
¡û
>W1810355091
PVLR01000081
Betaproteobacteria
Malikia spinosa 83 [PVLR]
481
406
-
Gly
GCC
[ENA]
¡û
>W1810659015
QJJS01000019
Betaproteobacteria
Sphaerotilus hippei DSM 566 [QJJS]
25750
25825
+
Gly
GCC
[ENA]
¡û
>SRA1014380
SRR023845.114661
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
17
92
+
Gly
GCC
[SRA]
>W1610604917
LFRI01000516
Betaproteobacteria
Aquabacterium parvum [LFRI]
12197
12122
-
Gly
GCC
[ENA]
¡û
>W1610604919
LFRI01000516
Betaproteobacteria
Aquabacterium parvum [LFRI]
11553
11478
-
Gly
GCC
[ENA]
¡û
>W1610977562
LVWD01000010
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
19786
19861
+
Gly
GCC
[ENA]
¡û
>W1610977567
LVWD01000013
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
549791
549716
-
Gly
GCC
[ENA]
¡û
>W1610977573
LVWD01000017
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
118
193
+
Gly
GCC
[ENA]
¡û
>W1710605884
FWXJ01000002
Betaproteobacteria
Polynucleobacter kasalickyi VK13 [FWXJ]
265576
265651
+
Gly
GCC
[ENA]
¡û
>W1710726360
LFRI01000516
Betaproteobacteria
Aquabacterium parvum [LFRI]
12197
12122
-
Gly
GCC
[ENA]
¡û
>W1710726362
LFRI01000516
Betaproteobacteria
Aquabacterium parvum [LFRI]
11553
11478
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK