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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.488335 (32 seq.)
>C171057842
CP017150
Actinomycetota
Brevibacterium aurantiacum SMQ-1335 [CP017150]
1144886
1144957
+
Gly
CCC
-
¡û
>w005554
AAGP01000011
Actinomycetota
Brevibacterium aurantiacum BL2 [AAGP]
82689
82616
-
Gly
CCC
[ENA]
¡û
>WENV180280439
OBHY01023052
[OBHY] human gut metagenome; Tissue from the tricuspid valve
87
158
+
Gly
CCC
[ENA]
¢þ
>WENV180305159
OBJK01006991
[OBJK] human gut metagenome; Skin biopsy
144
215
+
Gly
CCC
[ENA]
¢þ
>C191031845
CP025330
Actinomycetota
Brevibacterium aurantiacum SMQ-1417 [CP025330]
1174781
1174852
+
Gly
CCC
-
¡û
>C191031893
CP025331
Actinomycetota
Brevibacterium aurantiacum SMQ-1418 [CP025331]
1151285
1151356
+
Gly
CCC
-
¡û
>C191031941
CP025332
Actinomycetota
Brevibacterium aurantiacum SMQ-1421 [CP025332]
1073059
1073130
+
Gly
CCC
-
¡û
>C191031989
CP025333
Actinomycetota
Brevibacterium aurantiacum SMQ-1419 [CP025333]
1113575
1113646
+
Gly
CCC
-
¡û
>C191032036
CP025334
Actinomycetota
Brevibacterium aurantiacum SMQ-1420 [CP025334]
1172955
1173026
+
Gly
CCC
-
¡û
>W1910181615
BJME01000003
Actinomycetota
Brevibacterium aurantiacum NBRC 12171 [BJME]
54573
54502
-
Gly
CCC
[ENA]
¡û
>W1910500007
FXYX01000018
Actinomycetota
Brevibacterium iodinum ATCC 49514 [FXYX]
72717
72646
-
Gly
CCC
[ENA]
¡û
>W1910500084
FXYZ01000004
Actinomycetota
Brevibacterium aurantiacum [FXYZ]
284810
284881
+
Gly
CCC
[ENA]
¡û
>W1910500194
FXZB01000017
Actinomycetota
Brevibacterium aurantiacum ATCC 9175 [FXZB]
29233
29162
-
Gly
CCC
[ENA]
¡û
>W1910500276
FXZD01000003
Actinomycetota
Brevibacterium antiquum CNRZ 918 [FXZD]
315507
315578
+
Gly
CCC
[ENA]
¡û
>W1910500335
FXZE01000014
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
54854
54783
-
Gly
CCC
[ENA]
¡û
>W1910500427
FXZG01000012
Actinomycetota
Brevibacterium aurantiacum CNRZ 920 [FXZG]
52340
52269
-
Gly
CCC
[ENA]
¡û
>W1910500456
FXZH01000004
Actinomycetota
Brevibacterium sp. 239c [FXZH]
38262
38191
-
Gly
CCC
[ENA]
¡û
>W1910500532
FXZI01000011
Actinomycetota
Brevibacterium aurantiacum [FXZI]
96498
96569
+
Gly
CCC
[ENA]
¡û
>W1911203130
NRGO01000007
Actinomycetota
Brevibacterium aurantiacum 900_6 [NRGO]
49143
49072
-
Gly
CCC
[ENA]
¡û
>W1911203203
NRGP01000014
Actinomycetota
Brevibacterium aurantiacum 947_7 [NRGP]
44232
44161
-
Gly
CCC
[ENA]
¡û
>W1911203248
NRGQ01000026
Actinomycetota
Brevibacterium aurantiacum 962_8 [NRGQ]
42617
42546
-
Gly
CCC
[ENA]
¡û
>W1911203593
NRGX01000001
Actinomycetota
Brevibacterium aurantiacum JB5 [NRGX]
2904104
2904175
+
Gly
CCC
[ENA]
¡û
>W1911203816
NRHA01000013
Actinomycetota
Brevibacterium aurantiacum 738_8 [NRHA]
423093
423164
+
Gly
CCC
[ENA]
¡û
>W1911203841
NRHB01000002
Actinomycetota
Brevibacterium aurantiacum 341_13 [NRHB]
52043
51972
-
Gly
CCC
[ENA]
¡û
>W1810057035
PDHL01000027
Actinomycetota
Brevibacterium epidermidis EZ-K02 [PDHL]
55150
55221
+
Gly
CCC
[ENA]
¡û
>W1810756543
QPGC01000023
Actinomycetota
Brevibacterium aurantiacum 862_7 [QPGC]
91134
91205
+
Gly
CCC
[ENA]
¡û
>W1810756575
QPGD01000004
Actinomycetota
Brevibacterium aurantiacum 876_7 [QPGD]
410751
410822
+
Gly
CCC
[ENA]
¡û
>W1810756631
QPGE01000005
Actinomycetota
Brevibacterium aurantiacum 908_7 [QPGE]
51572
51501
-
Gly
CCC
[ENA]
¡û
>W1511402408
JTJZ01000011
Actinomycetota
Brevibacterium linens AE038-8 [JTJZ]
82739
82810
+
Gly
CCC
[ENA]
¡û
>C161078888
CP014869
Actinomycetota
Brevibacterium linens BS258 [CP014869]
1261175
1261246
+
Gly
CCC
[Ensembl]
¡û
>W1610069323
BCSJ01000017
Actinomycetota
Brevibacterium epidermidis NBRC 14811 [BCSJ]
120979
120908
-
Gly
CCC
[ENA]
¡û
>W1710066696
BCSJ01000017
Actinomycetota
Brevibacterium epidermidis NBRC 14811 [BCSJ]
120979
120908
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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