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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.48993 (47 seq.)
>W1710870576
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
516965
517050
+
Ser
TGA
[ENA]
¡û
>W1710879738
LMRW01000001
Actinomycetota
Agromyces sp. Soil535 [LMRW]
628434
628519
+
Ser
TGA
[ENA]
¡û
>W131179555
ARMM01000008
Actinomycetota
Gulosibacter faecalis ATCC 13722 [ARMM]
195934
195849
-
Ser
TGA
[ENA]
¡û
>W1711724760
MTQL01000007
Actinomycetota
Leifsonia sp. ALI-44-B [MTQL]
75989
75904
-
Ser
TGA
[ENA]
¡û
>W131217914
ATXF01000006
Actinomycetota
Agromyces italicus DSM 16388 [ATXF]
294331
294246
-
Ser
TGA
[ENA]
¡û
>W131218469
ATXT01000013
Actinomycetota
Humibacter albus DSM 18994 [ATXT]
124488
124573
+
Ser
TGA
[ENA]
¡û
>W131225819
AUDX01000009
Actinomycetota
Gulosibacter molinativorax DSM 13485 [AUDX]
123948
124033
+
Ser
TGA
[ENA]
¡û
>WENV180099661
NMRC01022183
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
11772
11857
+
Ser
TGA
[ENA]
¢þ
>WENV181234773
OFEU01006614
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
226
141
-
Ser
TGA
[ENA]
¢þ
>WENV181402773
OFTY01042776
[OFTY] sludge metagenome; sludge
204
289
+
Ser
TGA
[ENA]
¢þ
>WENV170609377
FUWD011386462
[FUWD] metagenome; unknown
207
120
-
Ser
TGA
[ENA]
¢þ
>WENV170717628
LSQX01043407
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1356
1441
+
Ser
TGA
[ENA]
¢þ
>C181001428
AP017315
Actinomycetota
Microcella alkaliphila JAM AC0309 [AP017315]
442386
442473
+
Ser
TGA
-
¡û
>C181143714
CP026923
Actinomycetota
Pontimonas salivibrio CL-TW6 [CP026923]
220210
220297
+
Ser
TGA
-
¡û
>C181169612
CP028913
Actinomycetota
Agromyces badenianii MF30-A [CP028913]
254881
254966
+
Ser
TGA
-
¡û
>C191143851
CP035491
Actinomycetota
Agromyces protaetiae FW100M-8 [CP035491]
528915
528830
-
Ser
TGA
-
¡û
>C191183359
CP040872
Actinomycetota
Agromyces laixinhei HY052 [CP040872]
105935
105850
-
Ser
TGA
-
¡û
>W1910374230
FUIC01000011
Actinomycetota
Gulosibacter sp. 10 [FUIC]
66130
66217
+
Ser
TGA
[ENA]
¡û
>W1910377771
FUKR01000022
Actinomycetota
Mycetocola reblochoni REB411 [FUKR]
94271
94358
+
Ser
TGA
[ENA]
¡û
>W1810058109
PDJE01000001
Actinomycetota
Microbacterium agarici DSM 21798 [PDJE]
192136
192051
-
Ser
TGA
[ENA]
¡û
>W1810090102
PGFF01000001
Actinomycetota
Diaminobutyricimonas aerilata DSM 27393 [PGFF]
319253
319340
+
Ser
TGA
[ENA]
¡û
>W1810121362
PHUH01000001
Actinomycetota
Microcella sp. HL-107 [PHUH]
1616087
1616002
-
Ser
TGA
[ENA]
¡û
>W1810277214
PSTQ01000022
Actinomycetota
Pseudoclavibacter sp. AY1F1 [PSTQ]
20263
20350
+
Ser
TGA
[ENA]
¡û
>W1810277390
PSTU01000018
Actinomycetota
Pseudoclavibacter sp. Z016 [PSTU]
75193
75280
+
Ser
TGA
[ENA]
¡û
>W1810277577
PSTY01000025
Actinomycetota
Pseudoclavibacter sp. RFBH5 [PSTY]
17369
17456
+
Ser
TGA
[ENA]
¡û
>W1810277592
PSTZ01000003
Actinomycetota
Pseudoclavibacter sp. RFBB5 [PSTZ]
291206
291293
+
Ser
TGA
[ENA]
¡û
>W1810277675
PSUA01000015
Actinomycetota
Pseudoclavibacter sp. RFBA6 [PSUA]
546031
546118
+
Ser
TGA
[ENA]
¡û
>W1810282047
PSXX01000007
Actinomycetota
Pseudoclavibacter sp. AY1H1 [PSXX]
145934
145847
-
Ser
TGA
[ENA]
¡û
>W1810282141
PSXZ01000015
Actinomycetota
Pseudoclavibacter sp. RFBJ3 [PSXZ]
498946
499033
+
Ser
TGA
[ENA]
¡û
>W1810282207
PSYB01000004
Actinomycetota
Pseudoclavibacter sp. RFBI4 [PSYB]
17369
17456
+
Ser
TGA
[ENA]
¡û
>W1810282294
PSYC01000049
Actinomycetota
Pseudoclavibacter sp. RFBG4 [PSYC]
46090
46177
+
Ser
TGA
[ENA]
¡û
>W1810387064
PXVE01000018
Actinomycetota
Gulosibacter molinativorax ON4 [PXVE]
32957
32872
-
Ser
TGA
[ENA]
¡û
>W1810392913
PYAU01000001
Actinomycetota
Labedella gwakjiensis DSM 21548 [PYAU]
1997817
1997904
+
Ser
TGA
[ENA]
¡û
>W1810860811
QTTL01000001
Actinomycetota
Agromyces sp. OV429 [QTTL]
569774
569859
+
Ser
TGA
[ENA]
¡û
>C161063180
CP013979
Actinomycetota
Agromyces aureus AR33 [CP013979]
322778
322863
+
Ser
TGA
[Ensembl]
¡û
>W1610069586
BCSP01000004
Actinomycetota
Gulosibacter bifidus NBRC 103089 [BCSP]
32306
32221
-
Ser
TGA
[ENA]
¡û
>W1610112226
CZJS01000083
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
19086
19173
+
Ser
TGA
[ENA]
¡û
>W1610112542
CZJY01000058
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
15001
15088
+
Ser
TGA
[ENA]
¡û
>W1610726675
LMFU01000001
Actinomycetota
Agromyces sp. Root1464 [LMFU]
749875
749788
-
Ser
TGA
[ENA]
¡û
>W1610732922
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
516965
517050
+
Ser
TGA
[ENA]
¡û
>W1610742084
LMRW01000001
Actinomycetota
Agromyces sp. Soil535 [LMRW]
628434
628519
+
Ser
TGA
[ENA]
¡û
>W1710066959
BCSP01000004
Actinomycetota
Gulosibacter bifidus NBRC 103089 [BCSP]
32306
32221
-
Ser
TGA
[ENA]
¡û
>W1710114930
CZJS01000083
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
19086
19173
+
Ser
TGA
[ENA]
¡û
>W1710115246
CZJY01000058
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
15001
15088
+
Ser
TGA
[ENA]
¡û
>W1710534573
FNRY01000001
Actinomycetota
Microbacterium humi [FNRY]
675840
675755
-
Ser
TGA
[ENA]
¡û
>W1710575372
FOZD01000001
Actinomycetota
Agromyces sp. CF514 [FOZD]
561043
561128
+
Ser
TGA
[ENA]
¡û
>W1710603987
FUZP01000001
Actinomycetota
Okibacterium fritillariae [FUZP]
685650
685735
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK