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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.490063 (38 seq.)
>W1710996597
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1673659
1673734
+
Val
TAC
[ENA]
¡û
>W1710996599
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1673863
1673938
+
Val
TAC
[ENA]
¡û
>W131186724
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
249939
249864
-
Val
TAC
[ENA]
¡û
>W131186726
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
249671
249596
-
Val
TAC
[ENA]
¡û
>C025354
CP000109
Gammaproteobacteria
Hydrogenovibrio crunogenus [CP000109]
1288577
1288652
+
Val
TAC
[Ensembl]
¡û
>C025356
CP000109
Gammaproteobacteria
Hydrogenovibrio crunogenus [CP000109]
1288784
1288859
+
Val
TAC
[Ensembl]
¡û
>W141170947
AXZC01000004
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
574679
574604
-
Val
TAC
[ENA]
¡û
>W141170949
AXZC01000004
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
574424
574349
-
Val
TAC
[ENA]
¡û
>W141279835
JAGP01000001
Gammaproteobacteria
Hydrogenovibrio kuenenii DSM 12350 [JAGP]
1107526
1107601
+
Val
TAC
[ENA]
¡û
>W141279837
JAGP01000001
Gammaproteobacteria
Hydrogenovibrio kuenenii DSM 12350 [JAGP]
1107718
1107793
+
Val
TAC
[ENA]
¡û
>WENV170779584
LZQQ01000068
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
16688
16763
+
Val
TAC
[ENA]
¢þ
>WENV170779744
LZQR01000179
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
129
204
+
Val
TAC
[ENA]
¢þ
>WENV170779835
LZQR01001470
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
165
90
-
Val
TAC
[ENA]
¢þ
>C191011682
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
1613898
1613823
-
Val
TAC
-
¡û
>C191011684
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
1613696
1613621
-
Val
TAC
-
¡û
>C191084381
CP032096
Gammaproteobacteria
Hydrogenovibrio crunogenus SP-41 [CP032096]
1305386
1305461
+
Val
TAC
-
¡û
>C191084383
CP032096
Gammaproteobacteria
Hydrogenovibrio crunogenus SP-41 [CP032096]
1305592
1305667
+
Val
TAC
-
¡û
>C191098438
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1431172
1431247
+
Val
TAC
-
¡û
>C191098440
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1431414
1431489
+
Val
TAC
-
¡û
>C191098442
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1431654
1431729
+
Val
TAC
-
¡û
>C191134035
CP035033
Gammaproteobacteria
Hydrogenovibrio thermophilus JR-2 [CP035033]
1389804
1389879
+
Val
TAC
-
¡û
>C191134037
CP035033
Gammaproteobacteria
Hydrogenovibrio thermophilus JR-2 [CP035033]
1390006
1390081
+
Val
TAC
-
¡û
>C191180153
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
1168947
1169022
+
Val
TAC
-
¡û
>C191180155
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
1169214
1169289
+
Val
TAC
-
¡û
>W141733790
JNLD01000003
Gammaproteobacteria
Thiomicrorhabdus sp. Milos-T2 Milos-T2 [JNLD]
749710
749785
+
Val
TAC
[ENA]
¡û
>W141733792
JNLD01000003
Gammaproteobacteria
Thiomicrorhabdus sp. Milos-T2 Milos-T2 [JNLD]
749984
750059
+
Val
TAC
[ENA]
¡û
>W141776930
JOMK01000001
Gammaproteobacteria
Hydrogenovibrio sp. MA2-6 MA2-6 [JOMK]
599794
599869
+
Val
TAC
[ENA]
¡û
>W141776932
JOMK01000001
Gammaproteobacteria
Hydrogenovibrio sp. MA2-6 MA2-6 [JOMK]
599996
600071
+
Val
TAC
[ENA]
¡û
>W141820285
JQMT01000001
Gammaproteobacteria
Hydrogenovibrio sp. Milos-T1 Milos-T1 [JQMT]
1081730
1081655
-
Val
TAC
[ENA]
¡û
>W141820287
JQMT01000001
Gammaproteobacteria
Hydrogenovibrio sp. Milos-T1 Milos-T1 [JQMT]
1081533
1081458
-
Val
TAC
[ENA]
¡û
>ENV09001716
ACQI01003520
Hydrothermal vent metagenome LCHCB.C1
41
116
+
Val
TAC
[ENA]
¡û
>ENV09001718
ACQI01003520
Hydrothermal vent metagenome LCHCB.C1
419
494
+
Val
TAC
[ENA]
¡û
>ENV09001768
ACQI01005275
Hydrothermal vent metagenome LCHCB.C1
264
339
+
Val
TAC
[ENA]
¡û
>ENV09001790
ACQI01006182
Hydrothermal vent metagenome LCHCB.C1
571
646
+
Val
TAC
[ENA]
¡û
>WENV069816
AACY023784495
Marine microbial communities from Global Ocean Sampling (GOS)
161
238
+
Val
TAC
[ENA]
>WENV069818
AACY023784495
Marine microbial communities from Global Ocean Sampling (GOS)
399
476
+
Val
TAC
[ENA]
>W1610851254
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1673659
1673734
+
Val
TAC
[ENA]
¡û
>W1610851256
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1673863
1673938
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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