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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.490688 (14 seq.)
>W1711283076
LZOF01000048
Spirochaetota
Brachyspira hampsonii [LZOF]
11017
11089
+
Val
TAC
[ENA]
¡û
>W1711283098
LZOG01000110
Spirochaetota
Brachyspira hampsonii [LZOG]
11685
11613
-
Val
TAC
[ENA]
¡û
>W1711351563
MDCO01000012
Spirochaetota
Brachyspira hampsonii [MDCO]
140817
140889
+
Val
TAC
[ENA]
¡û
>W131093656
AOMM01000388
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
7065
7137
+
Val
TAC
[ENA]
¡û
>WENV180116976
OARB01001760
[OARB] human gut metagenome; ENVO:feces
221
293
+
Val
TAC
[ENA]
¢þ
>WENV180117803
OARM01000089
[OARM] human gut metagenome; ENVO:feces
25666
25594
-
Val
TAC
[ENA]
¢þ
>W141037634
ALNZ01000022
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
135467
135395
-
Val
TAC
[ENA]
¡û
>C191017000
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
1305983
1305911
-
Val
TAC
-
¡û
>W1910000005
AFQM01000005
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
27071
27143
+
Val
TAC
[ENA]
¡û
>W1910569220
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
556884
556812
-
Val
TAC
[ENA]
¡û
>C10101978
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
1584968
1585040
+
Val
TAC
[Ensembl]
¡û
>C131001500
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
1647577
1647505
-
Val
TAC
[Ensembl]
¡û
>C131003827
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
2553047
2552975
-
Val
TAC
[Ensembl]
¡û
>C131019646
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
285355
285427
+
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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