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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.491406 (18 seq.)
>W131104596
APCS01000115
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
8162
8089
-
Gln
CTG
[ENA]
¡û
>C007958
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2005480
2005407
-
Gln
CTG
[Ensembl]
¡û
>WENV180232065
OBCO01000083
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
182121
182048
-
Gln
CTG
[ENA]
¢þ
>WENV180233268
OBCP01000272
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
24448
24375
-
Gln
CTG
[ENA]
¢þ
>WENV180569855
OCLR01000597
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
9357
9430
+
Gln
CTG
[ENA]
¢þ
>WENV180570801
OCLS01000603
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
13320
13247
-
Gln
CTG
[ENA]
¢þ
>WENV180571401
OCLT01000081
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
182121
182048
-
Gln
CTG
[ENA]
¢þ
>WENV180573651
OCLW01000081
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
37819
37892
+
Gln
CTG
[ENA]
¢þ
>WENV180639728
OCRL01000087
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
182121
182048
-
Gln
CTG
[ENA]
¢þ
>WENV180640652
OCRM01000081
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
182121
182048
-
Gln
CTG
[ENA]
¢þ
>W141154790
AXLL01000178
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
3795
3722
-
Gln
CTG
[ENA]
¡û
>C181196453
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
277126
277199
+
Gln
CTG
-
¡û
>W141561458
JHYL01000004
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
182161
182088
-
Gln
CTG
[ENA]
¡û
>W141702077
JMLF01000018
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
37968
38041
+
Gln
CTG
[ENA]
¡û
>C10105360
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2005480
2005407
-
Gln
CTG
[Ensembl]
¡û
>C11107287
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2005480
2005407
-
Gln
CTG
[Ensembl]
¡û
>C161082962
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
720206
720279
+
Gln
CTG
-
¡û
>W1710542265
FNZA01000005
Deinococcota
Deinococcus reticulitermitis [FNZA]
105698
105771
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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