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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.492718 (89 seq.)
>W1710884028
LMWI01000001
Actinomycetota
Micromonospora maris [LMWI]
83087
83160
+
Gly
CCC
[ENA]
¡û
>W1711044153
LRMV01000002
Actinomycetota
Micromonospora rifamycinica [LRMV]
14847
14774
-
Gly
CCC
[ENA]
¡û
>W131163655
AQZW01000021
Actinomycetota
Salinispora mooreana DSM 45549 [AQZW]
32169
32096
-
Gly
CCC
[ENA]
¡û
>W131164785
ARBB01000004
Actinomycetota
Salinispora arenicola DSM 45545 [ARBB]
1291788
1291861
+
Gly
CCC
[ENA]
¡û
>W131171546
ARGH01000051
Actinomycetota
Salinispora pacifica CNS055 [ARGH]
76373
76446
+
Gly
CCC
[ENA]
¡û
>W131171612
ARGI01000064
Actinomycetota
Salinispora pacifica CNS860 [ARGI]
124149
124076
-
Gly
CCC
[ENA]
¡û
>W131171735
ARGL01000047
Actinomycetota
Salinispora pacifica CNT045 [ARGL]
54777
54850
+
Gly
CCC
[ENA]
¡û
>W131172416
ARGX01000066
Actinomycetota
Salinispora arenicola CNS051 [ARGX]
56473
56546
+
Gly
CCC
[ENA]
¡û
>W131172575
ARHA01000074
Actinomycetota
Salinispora arenicola CNS744 [ARHA]
6967
6894
-
Gly
CCC
[ENA]
¡û
>W131172839
ARHF01000084
Actinomycetota
Salinispora arenicola CNY256 [ARHF]
143786
143859
+
Gly
CCC
[ENA]
¡û
>W131173063
ARHJ01000077
Actinomycetota
Salinispora pacifica CNT584 [ARHJ]
118298
118225
-
Gly
CCC
[ENA]
¡û
>W131173141
ARHL01000088
Actinomycetota
Salinispora pacifica CNT851 [ARHL]
87464
87391
-
Gly
CCC
[ENA]
¡û
>W131173370
ARHP01000132
Actinomycetota
Salinispora tropica CNR699 [ARHP]
120320
120247
-
Gly
CCC
[ENA]
¡û
>W131177330
ARKR01000094
Actinomycetota
Salinispora arenicola CNH877 [ARKR]
8925
8852
-
Gly
CCC
[ENA]
¡û
>W1711261884
LYXF01000037
Actinomycetota
Micromonospora sp. II [LYXF]
6898
6971
+
Gly
CCC
[ENA]
¡û
>W131217690
ATXA01000026
Actinomycetota
Frankia sp. Iso899 [ATXA]
29677
29750
+
Gly
CCC
[ENA]
¡û
>W131228830
AUGH01000014
Actinomycetota
Salinispora mooreana CNS237 [AUGH]
190101
190174
+
Gly
CCC
[ENA]
¡û
>W131234355
AUKS01000002
Actinomycetota
Salinispora tropica CNT261 [AUKS]
217328
217401
+
Gly
CCC
[ENA]
¡û
>C024762
CP000667
Actinomycetota
Salinispora tropica CNB-440 [CP000667]
67524
67597
+
Gly
CCC
[Ensembl]
¡û
>WENV180018016
FSXZ01001956
[FSXZ] metagenome; soil
18720
18793
+
Gly
CCC
[ENA]
¢þ
>W141000282
ACQO01000195
Actinomycetota
Micromonospora sp. M42 [ACQO]
22138
22065
-
Gly
CCC
[ENA]
¡û
>WENV180101264
OAOU01014864
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
193
121
-
Gly
CCC
[ENA]
¢þ
>WENV180289489
OBIS01075424
[OBIS] soil metagenome; Alaskan Permafrost
82
153
+
Gly
CCC
[ENA]
¢þ
>WENV180389112
OBPI01033229
[OBPI] marine metagenome; Sterile flask
168
95
-
Gly
CCC
[ENA]
¢þ
>WENV180636214
OCRE01088480
[OCRE] marine metagenome; Seawater
76
147
+
Gly
CCC
[ENA]
¢þ
>WENV181145454
OEHO01310000
[OEHO] metagenome; unknown
83
156
+
Gly
CCC
[ENA]
¢þ
>WENV181292114
OFHD01038691
[OFHD] soil metagenome; Clay
177
250
+
Gly
CCC
[ENA]
¢þ
>WENV181294590
OFHH01012835
[OFHH] soil metagenome; Clay
363
290
-
Gly
CCC
[ENA]
¢þ
>WENV181296426
OFHJ01035142
[OFHJ] soil metagenome; Clay
536
609
+
Gly
CCC
[ENA]
¢þ
>WENV181401870
OFTX01012663
[OFTX] sludge metagenome; sludge
325
254
-
Gly
CCC
[ENA]
¢þ
>W141169305
AXVR01000029
Actinomycetota
Salinispora cortesiana CNY202 [AXVR]
56094
56167
+
Gly
CCC
[ENA]
¡û
>W141218138
AZWB01000017
Actinomycetota
Salinispora oceanensis CNT029 [AZWB]
48432
48359
-
Gly
CCC
[ENA]
¡û
>W141218198
AZWC01000044
Actinomycetota
Salinispora pacifica CNT001 [AZWC]
14628
14555
-
Gly
CCC
[ENA]
¡û
>W141218489
AZWI01000021
Actinomycetota
Salinispora arenicola CNB458 [AZWI]
2203
2130
-
Gly
CCC
[ENA]
¡û
>W141218527
AZWJ01000006
Actinomycetota
Salinispora vitiensis CNT148 [AZWJ]
203781
203854
+
Gly
CCC
[ENA]
¡û
>W141218587
AZWK01000017
Actinomycetota
Salinispora tropica CNS197 [AZWK]
55052
55125
+
Gly
CCC
[ENA]
¡û
>W141219328
AZWY01000030
Actinomycetota
Salinispora arenicola CNQ748 [AZWY]
8363
8290
-
Gly
CCC
[ENA]
¡û
>W141219482
AZXB01000033
Actinomycetota
Salinispora arenicola CNH905 [AZXB]
61534
61607
+
Gly
CCC
[ENA]
¡û
>W141219635
AZXE01000016
Actinomycetota
Salinispora tropica CNB476 [AZXE]
25746
25673
-
Gly
CCC
[ENA]
¡û
>W141219756
AZXG01000027
Actinomycetota
Salinispora arenicola CNT800 [AZXG]
10535
10462
-
Gly
CCC
[ENA]
¡û
>W141277934
JAEY01000033
Actinomycetota
Salinispora arenicola CNH964 [JAEY]
58382
58455
+
Gly
CCC
[ENA]
¡û
>WENV183715190
PDWI01226265
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1125
1052
-
Gly
CCC
[ENA]
¢þ
>WENV170142529
CENY01013606
[CENY] marine metagenome genome assembly TARA_032_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
96
169
+
Gly
CCC
[ENA]
¢þ
>WENV170152501
CEOF01008280
[CEOF] marine metagenome genome assembly TARA_018_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
134
61
-
Gly
CCC
[ENA]
¢þ
>WENV170206822
CEPU01014975
[CEPU] marine metagenome genome assembly TARA_041_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
118
45
-
Gly
CCC
[ENA]
¢þ
>WENV170838485
MDSZ01168715
[MDSZ] marine metagenome; seawater
2348
2275
-
Gly
CCC
[ENA]
¢þ
>WENV170888662
MDTC01261703
[MDTC] marine metagenome; seawater
1674
1747
+
Gly
CCC
[ENA]
¢þ
>C181162592
CP028158
Actinomycetota
Plantactinospora sp. BC1 [CP028158]
3942502
3942429
-
Gly
CCC
-
¡û
>C181162642
CP028159
Actinomycetota
Plantactinospora sp. BB1 [CP028159]
7795430
7795357
-
Gly
CCC
-
¡û
>C191007427
AP019371
Actinomycetota
Actinoplanes sp. OR16 [AP019371]
2366047
2365976
-
Gly
CCC
-
¡û
>C191026828
CP024087
Actinomycetota
Micromonospora tulbaghiae CNY-010 [CP024087]
5472791
5472718
-
Gly
CCC
-
¡û
>W1910549521
FZPH01000031
Actinomycetota
Asanoa hainanensis CGMCC 4.5593 [FZPH]
11309
11236
-
Gly
CCC
[ENA]
¡û
>W1910900995
NGNT01000008
Actinomycetota
Micromonospora echinospora ATCC 15837 [NGNT]
80885
80958
+
Gly
CCC
[ENA]
¡û
>W1911492556
OBDY01000025
Actinomycetota
Actinoplanes atraurantiacus CGMCC 4.6857 [OBDY]
55955
55884
-
Gly
CCC
[ENA]
¡û
>W1911675709
QGGF01000358
Actinomycetota
Micromonospora globispora S2901 [QGGF]
1961
1888
-
Gly
CCC
[ENA]
¡û
>W1911676349
QGTA01000221
Actinomycetota
Micromonospora chalcea LB41 [QGTA]
13496
13569
+
Gly
CCC
[ENA]
¡û
>W1911676741
QHHV01000406
Actinomycetota
Actinoplanes sp. ATCC 53533 [QHHV]
807
736
-
Gly
CCC
[ENA]
¡û
>W1911766754
QXEC01000008
Actinomycetota
Micromonospora radicis AZ1-13 [QXEC]
160574
160501
-
Gly
CCC
[ENA]
¡û
>W1810072263
PEFG01000001
Actinomycetota
Micromonospora sp. CNZ299 [PEFG]
1457475
1457548
+
Gly
CCC
[ENA]
¡û
>W1810173707
PJNG01000001
Actinomycetota
Micromonospora sp. CNZ309 [PJNG]
5387025
5387098
+
Gly
CCC
[ENA]
¡û
>W1810223862
POTX01000069
Actinomycetota
Micromonospora endophytica DSM 45430 [POTX]
9265
9338
+
Gly
CCC
[ENA]
¡û
>W1810223911
POTY01000020
Actinomycetota
Micromonospora craterilacus NA12 [POTY]
13336
13409
+
Gly
CCC
[ENA]
¡û
>W1810224112
POUB01000053
Actinomycetota
Micromonospora deserti 13K206 [POUB]
13345
13418
+
Gly
CCC
[ENA]
¡û
>W1810392117
PYAA01000028
Actinomycetota
Micromonospora noduli LAH08 [PYAA]
8525
8598
+
Gly
CCC
[ENA]
¡û
>W1810392643
PYAK01000055
Actinomycetota
Micromonospora noduli GUI43 [PYAK]
28682
28609
-
Gly
CCC
[ENA]
¡û
>W1810608025
QGSU01000387
Actinomycetota
Micromonospora globispora S2903 [QGSU]
157
84
-
Gly
CCC
[ENA]
¡û
>W1810609398
QGTX01000001
Actinomycetota
Geodermatophilus normandii DSM 45417 [QGTX]
1632883
1632812
-
Gly
CCC
[ENA]
¡û
>W1810675383
QKKX01000016
Actinomycetota
Micromonospora sp. MW-13 MW13 [QKKX]
34092
34019
-
Gly
CCC
[ENA]
¡û
>W1810884445
QUMQ01000001
Actinomycetota
Asanoa ferruginea DSM 44099 [QUMQ]
2527381
2527454
+
Gly
CCC
[ENA]
¡û
>W10114136
ADGV01000048
Actinomycetota
Micromonospora sp. L5 [ADGV]
19117
19190
+
Gly
CCC
[ENA]
¡û
>C10107961
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
7307598
7307671
+
Gly
CCC
[Ensembl]
¡û
>W11117472
ADGV01000048
Actinomycetota
Micromonospora sp. L5 [ADGV]
19117
19190
+
Gly
CCC
[ENA]
¡û
>C161109588
LT594323
Actinomycetota
Micromonospora auratinigra DSM 44815 [LT594323]
5086526
5086599
+
Gly
CCC
-
¡û
>W1610054818
BBVA01000008
Actinomycetota
Micromonospora sp. NBRC 110037 [BBVA]
92653
92580
-
Gly
CCC
[ENA]
¡û
>W1610745954
LMWI01000001
Actinomycetota
Micromonospora maris [LMWI]
83087
83160
+
Gly
CCC
[ENA]
¡û
>W1610885398
LRMV01000002
Actinomycetota
Micromonospora rifamycinica [LRMV]
14847
14774
-
Gly
CCC
[ENA]
¡û
>W1710051517
BBVA01000008
Actinomycetota
Micromonospora sp. NBRC 110037 [BBVA]
92653
92580
-
Gly
CCC
[ENA]
¡û
>W1710502748
FMCR01000001
Actinomycetota
Micromonospora saelicesensis [FMCR]
1374358
1374285
-
Gly
CCC
[ENA]
¡û
>W1710502952
FMCU01000026
Actinomycetota
Micromonospora matsumotoense [FMCU]
54195
54268
+
Gly
CCC
[ENA]
¡û
>W1710502974
FMCV01000002
Actinomycetota
Micromonospora marina [FMCV]
155444
155371
-
Gly
CCC
[ENA]
¡û
>W1710503065
FMCX01000001
Actinomycetota
Micromonospora mirobrigensis [FMCX]
1480406
1480333
-
Gly
CCC
[ENA]
¡û
>W1710503638
FMDN01000005
Actinomycetota
Micromonospora halophytica [FMDN]
87841
87768
-
Gly
CCC
[ENA]
¡û
>W1710504474
FMHZ01000002
Actinomycetota
Micromonospora citrea [FMHZ]
3413201
3413128
-
Gly
CCC
[ENA]
¡û
>W1710504630
FMIC01000002
Actinomycetota
Micromonospora peucetia [FMIC]
1975587
1975514
-
Gly
CCC
[ENA]
¡û
>W1710561047
FONV01000017
Actinomycetota
Actinoplanes philippinensis [FONV]
104267
104338
+
Gly
CCC
[ENA]
¡û
>W1710572401
FOWQ01000012
Actinomycetota
Geodermatophilus dictyosporus DSM 44208 [FOWQ]
87739
87812
+
Gly
CCC
[ENA]
¡û
>W1710584898
FQVX01000003
Actinomycetota
Geodermatophilus nigrescens [FQVX]
213168
213095
-
Gly
CCC
[ENA]
¡û
>W1710592798
FRCS01000010
Actinomycetota
Cryptosporangium aurantiacum [FRCS]
48079
48006
-
Gly
CCC
[ENA]
¡û
>W1710593489
FRDM01000024
Actinomycetota
Geodermatophilus obscurus [FRDM]
941
868
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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