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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.494643 (29 seq.)
>W1711312235
MASS01000013
Bacillota
Desulfosporosinus sp. BG [MASS]
87153
87080
-
Gly
TCC
[ENA]
¡û
>W1711312287
MASS01000098
Bacillota
Desulfosporosinus sp. BG [MASS]
6690
6763
+
Gly
TCC
[ENA]
¡û
>W1711510598
MLBF01000097
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
6333
6406
+
Gly
TCC
[ENA]
¡û
>W1711926290
NADJ01000038
Bacillota
Desulfosporosinus sp. FKB [NADJ]
121351
121278
-
Gly
TCC
[ENA]
¡û
>W1711932772
NAHZ01000033
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
184378
184451
+
Gly
TCC
[ENA]
¡û
>WENV181555546
OGIT01009313
[OGIT] metagenome; Human gut stool
13
86
+
Gly
TCC
[ENA]
¢þ
>WENV170001682
AGFS01122838
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
322
249
-
Gly
TCC
[ENA]
¢þ
>WENV170658866
JUEG02001262
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
1330
1257
-
Gly
TCC
[ENA]
¢þ
>WENV170658872
JUEG02001270
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
222542
222469
-
Gly
TCC
[ENA]
¢þ
>WENV170658892
JUEG02001293
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
22509
22582
+
Gly
TCC
[ENA]
¢þ
>W1810047165
OMOF01000012
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
5660
5733
+
Gly
TCC
[ENA]
¡û
>WENV11101754
AGFS01122838
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
322
249
-
Gly
TCC
[ENA]
¡û
>W1511187122
JMGA01000029
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
19427
19354
-
Gly
TCC
[ENA]
¡û
>W1511187155
JMGA01000078
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
22730
22803
+
Gly
TCC
[ENA]
¡û
>W1511187167
JMGA01000080
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
1384
1457
+
Gly
TCC
[ENA]
¡û
>W1511645997
LDZY01000001
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
70115
70042
-
Gly
TCC
[ENA]
¡û
>W11177304
AGAF01000251
Bacillota
Desulfosporosinus sp. OT [AGAF]
877
804
-
Gly
TCC
[ENA]
¡û
>W11177305
AGAF01000263
Bacillota
Desulfosporosinus sp. OT [AGAF]
29382
29309
-
Gly
TCC
[ENA]
¡û
>W11181317
AGJA01000001
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
1348595
1348668
+
Gly
TCC
[ENA]
¡û
>W11181331
AGJA01000001
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
111268
111195
-
Gly
TCC
[ENA]
¡û
>W11181380
AGJA01000017
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
1223
1150
-
Gly
TCC
[ENA]
¡û
>C121005939
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
108909
108982
+
Gly
TCC
[Ensembl]
¡û
>C121005972
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
4214533
4214460
-
Gly
TCC
[Ensembl]
¡û
>C121005989
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
2917188
2917115
-
Gly
TCC
[Ensembl]
¡û
>C121014779
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
102901
102974
+
Gly
TCC
[Ensembl]
¡û
>C121014816
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
3718613
3718540
-
Gly
TCC
[Ensembl]
¡û
>C121014829
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
3014310
3014237
-
Gly
TCC
[Ensembl]
¡û
>C121014891
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
2952311
2952238
-
Gly
TCC
[Ensembl]
¡û
>W121010467
AGJG01000012
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
133462
133389
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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