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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49681 (54 seq.)
>W1711273488
LZFW01000001
Gammaproteobacteria
Vibrio sp. UCD-FRSSP16_30 [LZFW]
150247
150334
+
Ser
GGA
[ENA]
¡û
>W1711273687
LZFX01000057
Gammaproteobacteria
Vibrio sp. UCD-FRSSP16_10 [LZFX]
150247
150334
+
Ser
GGA
[ENA]
¡û
>W1711304091
MAJZ01000278
Gammaproteobacteria
Vibrio genomosp. F10 [MAJZ]
1829
1742
-
Ser
GGA
[ENA]
¡û
>W131228995
AUGL01000009
Gammaproteobacteria
Ferrimonas futtsuensis DSM 18154 [AUGL]
164916
165003
+
Ser
GGA
[ENA]
¡û
>W1711621359
MPDB01000001
Gammaproteobacteria
Vibrio sp. MedPE-SWchi [MPDB]
638400
638313
-
Ser
GGA
[ENA]
¡û
>W131180113
ARMW01000026
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
215165
215252
+
Ser
GGA
[ENA]
¡û
>W131225172
AUDJ01000002
Gammaproteobacteria
Ferrimonas kyonanensis DSM 18153 [AUDJ]
41678
41591
-
Ser
GGA
[ENA]
¡û
>W141231642
BAUJ01000018
Gammaproteobacteria
Vibrio halioticoli NBRC 102217 [BAUJ]
69739
69826
+
Ser
GGA
[ENA]
¡û
>WENV170012594
ASRM01000725
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2600
2513
-
Ser
GGA
[ENA]
¡û
>WENV170387600
CETY01452499
[CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2926
3013
+
Ser
GGA
[ENA]
¡û
>WENV170635812
JDSH01009531
[JDSH] bioreactor metagenome; continuous culture bioreactor electron acceptor NO2- transfer2; day 38 after inoculation
184
97
-
Ser
GGA
[ENA]
¡û
>WENV170646395
JQGR01001093
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
1120
1033
-
Ser
GGA
[ENA]
¡û
>C181227336
LT960611
Gammaproteobacteria
Vibrio tapetis subsp. tapetis [LT960611]
1060618
1060531
-
Ser
GGA
-
¡û
>W1910007143
BCUP01000001
Gammaproteobacteria
Vibrio halioticoli IAM 14596 [BCUP]
824813
824900
+
Ser
GGA
[ENA]
¡û
>W1910180555
BJLF01000003
Gammaproteobacteria
Vibrio inusitatus NBRC 102082 [BJLF]
61120
61207
+
Ser
GGA
[ENA]
¡û
>W1910682743
MCWZ01000321
Gammaproteobacteria
Vibrio sp. 10N.261.55.A7 [MCWZ]
13547
13460
-
Ser
GGA
[ENA]
¡û
>W1910784528
MPZM01000005
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
30126
30039
-
Ser
GGA
[ENA]
¡û
>W1910784582
MPZM01000085
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
2033
2120
+
Ser
GGA
[ENA]
¡û
>W1910872486
NDHZ01000045
Gammaproteobacteria
Vibrio sp. V04_P4A5T148 [NDHZ]
10789
10702
-
Ser
GGA
[ENA]
¡û
>W1910872673
NDIC01000404
Gammaproteobacteria
Vibrio sp. V07_P2A8T137 [NDIC]
2767
2680
-
Ser
GGA
[ENA]
¡û
>W1910872905
NDIG01000230
Gammaproteobacteria
Vibrio sp. V11_P1A41T118 [NDIG]
10789
10702
-
Ser
GGA
[ENA]
¡û
>W1910873265
NDIK01000302
Gammaproteobacteria
Vibrio sp. V17_P4S1T151 [NDIK]
14097
14010
-
Ser
GGA
[ENA]
¡û
>W1910873417
NDIN01000030
Gammaproteobacteria
Vibrio sp. V20_P4S3T152 [NDIN]
5786
5699
-
Ser
GGA
[ENA]
¡û
>W1810085696
PFXK01000001
Gammaproteobacteria
Vibrio sp. HA2012 [PFXK]
172639
172726
+
Ser
GGA
[ENA]
¡û
>W1810222311
POSH01000004
Gammaproteobacteria
Vibrio diazotrophicus 60.6B [POSH]
152381
152294
-
Ser
GGA
[ENA]
¡û
>W1810222486
POSK01000002
Gammaproteobacteria
Vibrio diazotrophicus 60.27F [POSK]
520496
520583
+
Ser
GGA
[ENA]
¡û
>W2010076381
BCUP01000001
Gammaproteobacteria
Vibrio halioticoli IAM 14596 [BCUP]
824813
824900
+
Ser
GGA
[ENA]
¡û
>W2010094295
BJLF01000003
Gammaproteobacteria
Vibrio inusitatus NBRC 102082 [BJLF]
61120
61207
+
Ser
GGA
[ENA]
¡û
>W2010583196
JAAZTV010000001
Gammaproteobacteria
Vibrio aestuarianus subsp. francensis 02/041 [JAAZTV]
1726692
1726605
-
Ser
GGA
[ENA]
¡û
>W2010585965
JABANH010000014
Gammaproteobacteria
Vibrio aestuarianus subsp. francensis 07/115 [JABANH]
774720
774633
-
Ser
GGA
[ENA]
¡û
>W2010593210
JABEQC010000003
Gammaproteobacteria
Vibrio plantisponsor LMG 24470 [JABEQC]
212337
212250
-
Ser
GGA
[ENA]
¡û
>W2010816503
MCWZ01000321
Gammaproteobacteria
Vibrio sp. 10N.261.55.A7 [MCWZ]
13547
13460
-
Ser
GGA
[ENA]
¡û
>W2010893117
MPZM01000005
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
30126
30039
-
Ser
GGA
[ENA]
¡û
>W2011701884
SWCI01000007
Gammaproteobacteria
Ferrimonas sp. IMCC35001 [SWCI]
34613
34526
-
Ser
GGA
[ENA]
¡û
>W2012147184
VTXE01000014
Gammaproteobacteria
Vibrio sp. 99-8-1 [VTXE]
66041
65954
-
Ser
GGA
[ENA]
¡û
>W2012327986
WHNV01000001
Gammaproteobacteria
Vibrio sp. B1Z05 [WHNV]
754398
754485
+
Ser
GGA
[ENA]
¡û
>W2110028663
BMKE01000015
Gammaproteobacteria
Oceanisphaera marina CGMCC 1.15923 [BMKE]
58166
58079
-
Ser
GGA
[ENA]
¡û
>W2110028666
BMKE01000017
Gammaproteobacteria
Oceanisphaera marina CGMCC 1.15923 [BMKE]
46283
46370
+
Ser
GGA
[ENA]
¡û
>W2110048545
BMYB01000011
Gammaproteobacteria
Oceanisphaera arctica KCTC 23013 [BMYB]
104163
104250
+
Ser
GGA
[ENA]
¡û
>W2110160300
JAAUWS010000003
Gammaproteobacteria
Vibrio sp. S11_S32 [JAAUWS]
4600
4513
-
Ser
GGA
[ENA]
¡û
>C231007079
AP024878
Gammaproteobacteria
Vibrio inusitatus LMG 23434 [AP024878, AP024879]
1152700
1152787
+
Ser
GGA
-
¡û
>C231007367
AP024885
Gammaproteobacteria
Vibrio neonatus JCM 21521 [AP024885, AP024886]
1639790
1639703
-
Ser
GGA
-
¡û
>C231007902
AP024900
Gammaproteobacteria
Vibrio rarus LMG 23674 [AP024900, AP024901]
1710812
1710725
-
Ser
GGA
-
¡û
>C231127999
CP072679
Gammaproteobacteria
Ferrimonas sp. SCSIO 43195 [CP072679]
3025553
3025640
+
Ser
GGA
-
¡û
>C241011683
AP027368
Gammaproteobacteria
Ferrimonas sp. YFM [AP027368]
1743761
1743674
-
Ser
GGA
-
¡û
>W2310023336
BSFZ01000001
Gammaproteobacteria
Vibrio sp. MACH09 [BSFZ]
1181381
1181468
+
Ser
GGA
[ENA]
¡û
>W121072099
AJYN01000087
Gammaproteobacteria
Vibrio genomosp. F10 F10 str. 9ZB36 [AJYN]
28917
29004
+
Ser
GGA
[ENA]
¡û
>W121072111
AJYO01000065
Gammaproteobacteria
Vibrio genomosp. F10 F10 str. 9ZD137 [AJYO]
28918
29005
+
Ser
GGA
[ENA]
¡û
>W121072132
AJYP01000155
Gammaproteobacteria
Vibrio genomosp. F10 F10 str. 9ZC157 [AJYP]
28908
28995
+
Ser
GGA
[ENA]
¡û
>W121072160
AJYQ01000123
Gammaproteobacteria
Vibrio genomosp. F10 F10 str. ZF-129 [AJYQ]
28914
29001
+
Ser
GGA
[ENA]
¡û
>W1611032837
LZFW01000001
Gammaproteobacteria
Vibrio sp. UCD-FRSSP16_30 [LZFW]
150247
150334
+
Ser
GGA
[ENA]
¡û
>W1611033036
LZFX01000057
Gammaproteobacteria
Vibrio sp. UCD-FRSSP16_10 [LZFX]
150247
150334
+
Ser
GGA
[ENA]
¡û
>W1611054291
MAJZ01000278
Gammaproteobacteria
Vibrio genomosp. F10 [MAJZ]
1829
1742
-
Ser
GGA
[ENA]
¡û
>W1710519103
FNEM01000014
Gammaproteobacteria
Ferrimonas sediminum [FNEM]
39040
38953
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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