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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49687 (67 seq.)
>W131087495
AOCN01000027
Actinomycetota
Leucobacter salsicius M1-8 [AOCN]
6808
6723
-
Leu
GAG
[ENA]
¡û
>W141188669
AYMV01000018
Actinomycetota
Leucobacter sp. PH1c [AYMV]
163
78
-
Leu
GAG
[ENA]
¡û
>WENV170011553
APMI01073924
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2948
2863
-
Leu
GAG
[ENA]
¡û
>WENV170723500
LSQX01271105
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2291
2206
-
Leu
GAG
[ENA]
¡û
>W141766604
JOEB01000027
Actinomycetota
Mycetocola saprophilus [JOEB]
76
161
+
Leu
GAG
[ENA]
¡û
>W1910374305
FUID01000096
Actinomycetota
7(1) [FUID]
7609
7694
+
Leu
GAG
[ENA]
¡û
>W1910782953
MPIM01000030
Actinomycetota
Leucobacter sp. OLCALW19 [MPIM]
125536
125621
+
Leu
GAG
[ENA]
¡û
>W1910792242
MRAQ01000073
Actinomycetota
Leucobacter sp. OLTLW20 [MRAQ]
125536
125621
+
Leu
GAG
[ENA]
¡û
>W1910792285
MRAR01000020
Actinomycetota
Leucobacter sp. OLAS13 [MRAR]
125536
125621
+
Leu
GAG
[ENA]
¡û
>W1910792309
MRAS01000006
Actinomycetota
Leucobacter sp. OLCS4 [MRAS]
3269
3354
+
Leu
GAG
[ENA]
¡û
>W1910792376
MRAT01000020
Actinomycetota
Leucobacter sp. OLDS2 [MRAT]
125536
125621
+
Leu
GAG
[ENA]
¡û
>W1910792403
MRAU01000102
Actinomycetota
Leucobacter sp. OLES1 [MRAU]
3973
3888
-
Leu
GAG
[ENA]
¡û
>W1910792465
MRAV01000014
Actinomycetota
Leucobacter sp. OLIS6 [MRAV]
615671
615586
-
Leu
GAG
[ENA]
¡û
>W1910792488
MRAW01000008
Actinomycetota
Leucobacter sp. OLJS4 [MRAW]
64451
64366
-
Leu
GAG
[ENA]
¡û
>W1910804087
MTCJ01000069
Actinomycetota
Leucobacter sp. OAMLP11 [MTCJ]
615644
615559
-
Leu
GAG
[ENA]
¡û
>W1910804127
MTCK01000105
Actinomycetota
Leucobacter sp. OAMSW11 [MTCK]
125536
125621
+
Leu
GAG
[ENA]
¡û
>W1910831759
MWZD01000014
Actinomycetota
Leucobacter massiliensis 122RC15 [MWZD]
81133
81048
-
Leu
GAG
[ENA]
¡û
>W1911159686
NPMR01000002
Actinomycetota
Microbacterium sp. Yaish 1 [NPMR]
300552
300467
-
Leu
GAG
[ENA]
¡û
>W2010892182
MPIM01000030
Actinomycetota
Leucobacter sp. OLCALW19 [MPIM]
125536
125621
+
Leu
GAG
[ENA]
¡û
>W2010900769
MRAQ01000073
Actinomycetota
Leucobacter sp. OLTLW20 [MRAQ]
125536
125621
+
Leu
GAG
[ENA]
¡û
>W2010900812
MRAR01000020
Actinomycetota
Leucobacter sp. OLAS13 [MRAR]
125536
125621
+
Leu
GAG
[ENA]
¡û
>W2010900836
MRAS01000006
Actinomycetota
Leucobacter sp. OLCS4 [MRAS]
3269
3354
+
Leu
GAG
[ENA]
¡û
>W2010900903
MRAT01000020
Actinomycetota
Leucobacter sp. OLDS2 [MRAT]
125536
125621
+
Leu
GAG
[ENA]
¡û
>W2010900930
MRAU01000102
Actinomycetota
Leucobacter sp. OLES1 [MRAU]
3973
3888
-
Leu
GAG
[ENA]
¡û
>W2010900992
MRAV01000014
Actinomycetota
Leucobacter sp. OLIS6 [MRAV]
615671
615586
-
Leu
GAG
[ENA]
¡û
>W2010901015
MRAW01000008
Actinomycetota
Leucobacter sp. OLJS4 [MRAW]
64451
64366
-
Leu
GAG
[ENA]
¡û
>W2010911909
MTCJ01000069
Actinomycetota
Leucobacter sp. OAMLP11 [MTCJ]
615644
615559
-
Leu
GAG
[ENA]
¡û
>W2010911949
MTCK01000105
Actinomycetota
Leucobacter sp. OAMSW11 [MTCK]
125536
125621
+
Leu
GAG
[ENA]
¡û
>W2010921879
MWZD01000014
Actinomycetota
Leucobacter massiliensis 122RC15 [MWZD]
81133
81048
-
Leu
GAG
[ENA]
¡û
>W2011403552
RCUX01000011
Actinomycetota
Mycetocola tolaasinivorans IF 016277 [RCUX]
77883
77798
-
Leu
GAG
[ENA]
¡û
>W2011403553
RCUX01000011
Actinomycetota
Mycetocola tolaasinivorans IF 016277 [RCUX]
77116
77031
-
Leu
GAG
[ENA]
¡û
>W2011458286
RPDI01000002
Actinomycetota
Leucobacter chromiireducens LYC-2 [RPDI]
169844
169929
+
Leu
GAG
[ENA]
¡û
>W2011579454
SHKI01000007
Actinomycetota
Leucobacter luti RF6 [SHKI]
133086
133001
-
Leu
GAG
[ENA]
¡û
>W2011634053
SMGC01000008
Actinomycetota
Leucobacter luti BIGb0106 [SMGC]
1510878
1510793
-
Leu
GAG
[ENA]
¡û
>W2011650093
SNYA01000004
Actinomycetota
Leucobacter luti JUb18 [SNYA]
258633
258548
-
Leu
GAG
[ENA]
¡û
>W2020000192
FUID01000096
Actinomycetota
7(1) [FUID]
7609
7694
+
Leu
GAG
[ENA]
¡û
>W2110271907
JACVMU010000007
Actinomycetota
Leucobacter sp. cx-42 [JACVMU]
113418
113333
-
Leu
GAG
[ENA]
¡û
>W2110271908
JACVMU010000007
Actinomycetota
Leucobacter sp. cx-42 [JACVMU]
111804
111719
-
Leu
GAG
[ENA]
¡û
>W2110272073
JACVMX010000003
Actinomycetota
Leucobacter sp. cx-328 [JACVMX]
137008
136923
-
Leu
GAG
[ENA]
¡û
>W2110272074
JACVMX010000003
Actinomycetota
Leucobacter sp. cx-328 [JACVMX]
135325
135240
-
Leu
GAG
[ENA]
¡û
>W2110434124
JAENJG010000001
Actinomycetota
Leucobacter sp. L43 [JAENJG]
110165
110250
+
Leu
GAG
[ENA]
¡û
>W2110492891
JAFEVO010000001
Actinomycetota
Leucobacter sp. Marseille-Q4368 [JAFEVO]
866022
865937
-
Leu
GAG
[ENA]
¡û
>W2110503851
JAFIRG010000003
Actinomycetota
Leucobacter sp. CX328 [JAFIRG]
137008
136923
-
Leu
GAG
[ENA]
¡û
>W2110503852
JAFIRG010000003
Actinomycetota
Leucobacter sp. CX328 [JAFIRG]
135325
135240
-
Leu
GAG
[ENA]
¡û
>W2110503906
JAFIRH010000007
Actinomycetota
Leucobacter sp. CX42 [JAFIRH]
113418
113333
-
Leu
GAG
[ENA]
¡û
>W2110503907
JAFIRH010000007
Actinomycetota
Leucobacter sp. CX42 [JAFIRH]
111804
111719
-
Leu
GAG
[ENA]
¡û
>C211052966
CP041635
Actinomycetota
Mycetocola sp. JXN-3 [CP041635]
1910085
1910170
+
Leu
GAG
-
¡û
>C211052967
CP041635
Actinomycetota
Mycetocola sp. JXN-3 [CP041635]
1910673
1910758
+
Leu
GAG
-
¡û
>C211379373
CP080492
Actinomycetota
Leucobacter luti Wa41.01b-2 [CP080492]
450834
450749
-
Leu
GAG
-
¡û
>C211394953
CP082322
Actinomycetota
Leucobacter sp. NB 10 [CP082322]
43756
43841
+
Leu
GAG
-
¡û
>C231355474
CP095043
Actinomycetota
Leucobacter sp. H25R-14 [CP095043]
723606
723521
-
Leu
GAG
-
¡û
>W2110761929
QYAB01000001
Actinomycetota
Leucobacter zeae CC-MF41 [QYAB]
2101048
2100963
-
Leu
GAG
[ENA]
¡û
>W2110761974
QYAC01000004
Actinomycetota
Leucobacter chromiireducens subsp. solipictus TAN 31504 [QYAC]
7002
7087
+
Leu
GAG
[ENA]
¡û
>W2110762040
QYAD01000004
Actinomycetota
Leucobacter chromiireducens subsp. chromiireducens L-1 [QYAD]
233432
233347
-
Leu
GAG
[ENA]
¡û
>W2110762130
QYAG01000003
Actinomycetota
Leucobacter luti RF6 [QYAG]
174915
175000
+
Leu
GAG
[ENA]
¡û
>W1510085931
CDWJ01000004
Actinomycetota
Leucobacter sp. 4J7B1 [CDWJ]
761326
761241
-
Leu
GAG
[ENA]
¡û
>C241137955
CP049863
Actinomycetota
Leucobacter viscericola HDW9C [CP049863]
62555
62640
+
Leu
GAG
-
¡û
>C241139172
CP049933
Actinomycetota
Leucobacter coleopterorum HDW9A [CP049933]
1419015
1419100
+
Leu
GAG
-
¡û
>C241139214
CP049934
Actinomycetota
Leucobacter insecticola HDW9B [CP049934]
1839752
1839837
+
Leu
GAG
-
¡û
>W1511008730
JHBW01000087
Actinomycetota
Leucobacter musarum CBX152 [JHBW]
112654
112741
+
Leu
GAG
[ENA]
¡û
>W1511008754
JHBX01000077
Actinomycetota
Leucobacter japonicus CBX130 [JHBX]
112671
112758
+
Leu
GAG
[ENA]
¡û
>W1511585450
LAYO01000107
Actinomycetota
Leucobacter sp. Ag1 [LAYO]
73989
73904
-
Leu
GAG
[ENA]
¡û
>W11178099
AGCW01000194
Actinomycetota
Leucobacter chromiiresistens JG 31 [AGCW]
6836
6751
-
Leu
GAG
[ENA]
¡û
>W1610590373
LDRK01000018
Actinomycetota
Leucobacter chromiiresistens [LDRK]
72208
72123
-
Leu
GAG
[ENA]
¡û
>WENV079887
AATN01006013
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
452
365
-
Leu
GAG
[ENA]
>W1710526124
FNKB01000001
Actinomycetota
Leucobacter chromiiresistens [FNKB]
2141200
2141285
+
Leu
GAG
[ENA]
¡û
>W1710709653
LDRK01000018
Actinomycetota
Leucobacter chromiiresistens [LDRK]
72208
72123
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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