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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49704 (75 seq.)
>WENV180356609
OBNL01000602
[OBNL] marine metagenome; ENVO:00002010
2212
2297
+
Ser
TGA
[ENA]
¡û
>WENV180590533
OCOT01057433
[OCOT] marine metagenome; ENVO:00002010
51
136
+
Ser
TGA
[ENA]
¡û
>WENV182558096
OJDL01004255
[OJDL] seawater metagenome; Sea water
442
527
+
Ser
TGA
[ENA]
¡û
>WENV182564636
OJEF01002434
[OJEF] seawater metagenome; Sea water
5411
5326
-
Ser
TGA
[ENA]
¡û
>WENV182567463
OJEO01001530
[OJEO] seawater metagenome; Sea water
1073
988
-
Ser
TGA
[ENA]
¡û
>WENV182568000
OJEP01009700
[OJEP] seawater metagenome; Sea water
1171
1256
+
Ser
TGA
[ENA]
¡û
>WENV183061363
OLHZ01004942
[OLHZ] seawater metagenome; Sea water
1465
1380
-
Ser
TGA
[ENA]
¡û
>WENV183736807
PJUD01000037
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
126952
127037
+
Ser
TGA
[ENA]
¡û
>WENV183736812
PJUD01000037
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
214992
214906
-
Ser
TGA
[ENA]
¡û
>WENV183738612
PJUE01000040
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
126952
127037
+
Ser
TGA
[ENA]
¡û
>WENV183738617
PJUE01000040
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
214992
214906
-
Ser
TGA
[ENA]
¡û
>WENV170229348
CEQG01107632
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
290
203
-
Ser
TGA
[ENA]
¡û
>WENV170248335
CEQQ01122188
[CEQQ] marine metagenome genome assembly TARA_076_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
129
42
-
Ser
TGA
[ENA]
¡û
>WENV170325448
CEST01020429
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4494
4581
+
Ser
TGA
[ENA]
¡û
>WENV170598996
FUWD010057578
[FUWD] metagenome; unknown
370
285
-
Ser
TGA
[ENA]
¡û
>WENV170619841
FUWD013022005
[FUWD] metagenome; unknown
4598
4683
+
Ser
TGA
[ENA]
¡û
>WENV170627312
FUWD013232598
[FUWD] metagenome; unknown
5235
5322
+
Ser
TGA
[ENA]
¡û
>WENV170628915
FUWD013256188
[FUWD] metagenome; unknown
17464
17379
-
Ser
TGA
[ENA]
¡û
>C181113425
CP025119
Bacteroidota
Polaribacter sp. ALD11 [CP025119]
1467957
1467872
-
Ser
TGA
-
¡û
>W09108573
ABTK01000001
Bacteroidota
Chitinophaga pinensis DSM 2588 [ABTK]
773344
773429
+
Ser
TGA
[ENA]
¡û
>W09108623
ABTK01000002
Bacteroidota
Chitinophaga pinensis DSM 2588 [ABTK]
971666
971581
-
Ser
TGA
[ENA]
¡û
>W1910577943
JUIW01000002
Bacteroidota
Flavobacterium beibuense RSKm HC5 [JUIW]
225963
225876
-
Ser
TGA
[ENA]
¡û
>W1910796556
MSCK01000002
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
1485471
1485556
+
Ser
TGA
[ENA]
¡û
>W1910805114
MTKN01000047
Bacteroidota
[Flexibacter] sp. ATCC 35208 [MTKN]
1896
1810
-
Ser
TGA
[ENA]
¡û
>W1910805123
MTKN01000080
Bacteroidota
[Flexibacter] sp. ATCC 35208 [MTKN]
14970
14885
-
Ser
TGA
[ENA]
¡û
>W1910805375
MTQF01000017
Bacteroidota
[Flexibacter] sp. ATCC 35103 [MTQF]
48133
48046
-
Ser
TGA
[ENA]
¡û
>W1910805376
MTQF01000017
Bacteroidota
[Flexibacter] sp. ATCC 35103 [MTQF]
47904
47819
-
Ser
TGA
[ENA]
¡û
>W1910809421
MUHC01000056
Bacteroidota
Flavobacterium piscis CCUG 60099 [MUHC]
10123
10208
+
Ser
TGA
[ENA]
¡û
>W1910809422
MUHC01000056
Bacteroidota
Flavobacterium piscis CCUG 60099 [MUHC]
10352
10439
+
Ser
TGA
[ENA]
¡û
>W1910809658
MUHH01000021
Bacteroidota
Flavobacterium tructae CCUG 60100 [MUHH]
57425
57510
+
Ser
TGA
[ENA]
¡û
>W1910809659
MUHH01000021
Bacteroidota
Flavobacterium tructae CCUG 60100 [MUHH]
57723
57808
+
Ser
TGA
[ENA]
¡û
>W1911139367
NOXV01000243
Bacteroidota
Flavobacterium sp. TH021 [NOXV]
974
889
-
Ser
TGA
[ENA]
¡û
>W1911180852
NQOT01000808
Bacteroidota
Flavobacterium sp. IR1 [NQOT]
117429
117516
+
Ser
TGA
[ENA]
¡û
>W1810173138
PJMV01000001
Bacteroidota
Polaribacter sp. Hel1_33_96 [PJMV]
1899178
1899093
-
Ser
TGA
[ENA]
¡û
>W1810858537
QTJV01000009
Bacteroidota
Chitinophaga silvisoli K20C18050901 [QTJV]
332729
332644
-
Ser
TGA
[ENA]
¡û
>W1810858557
QTJV01000021
Bacteroidota
Chitinophaga silvisoli K20C18050901 [QTJV]
3272
3357
+
Ser
TGA
[ENA]
¡û
>W2010714025
JACHVO010000002
Bacteroidota
Chitinophaga sancti 1232 [JACHVO]
1976626
1976711
+
Ser
TGA
[ENA]
¡û
>W2010714027
JACHVO010000002
Bacteroidota
Chitinophaga sancti 1232 [JACHVO]
1115562
1115477
-
Ser
TGA
[ENA]
¡û
>W2010762180
JUIW01000002
Bacteroidota
Flavobacterium beibuense RSKm HC5 [JUIW]
225963
225876
-
Ser
TGA
[ENA]
¡û
>W2010904191
MSCK01000002
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
1485471
1485556
+
Ser
TGA
[ENA]
¡û
>W2010912826
MTKN01000047
Bacteroidota
[Flexibacter] sp. ATCC 35208 [MTKN]
1896
1810
-
Ser
TGA
[ENA]
¡û
>W2010912835
MTKN01000080
Bacteroidota
[Flexibacter] sp. ATCC 35208 [MTKN]
14970
14885
-
Ser
TGA
[ENA]
¡û
>W2011014867
NOXV01000243
Bacteroidota
Flavobacterium sp. TH021 [NOXV]
974
889
-
Ser
TGA
[ENA]
¡û
>W2012047786
VIWA01000001
Bacteroidota
Chitinophaga pinensis 1204 [VIWA]
1663005
1663090
+
Ser
TGA
[ENA]
¡û
>W2012047802
VIWA01000001
Bacteroidota
Chitinophaga pinensis 1204 [VIWA]
831458
831371
-
Ser
TGA
[ENA]
¡û
>W2012103484
VOHS01000089
Bacteroidota
Chitinophaga pinensis YS-16 [VOHS]
7454
7539
+
Ser
TGA
[ENA]
¡û
>W2012408843
WOWP01000026
Bacteroidota
Flavobacterium rakeshii JCM 17928 [WOWP]
49218
49303
+
Ser
TGA
[ENA]
¡û
>W2012470878
WWEP01000020
Bacteroidota
Flavobacterium sp. MK4S-17 [WWEP]
5132
5217
+
Ser
TGA
[ENA]
¡û
>W2110027449
BMJE01000001
Bacteroidota
Flavobacterium suaedae CGMCC 1.15461 [BMJE]
394705
394790
+
Ser
TGA
[ENA]
¡û
>W2110362406
JADOTV010000001
Bacteroidota
Aureivirga sp. CE67 [JADOTV]
221353
221438
+
Ser
TGA
[ENA]
¡û
>W2110362462
JADOTV010000032
Bacteroidota
Aureivirga sp. CE67 [JADOTV]
9071
8986
-
Ser
TGA
[ENA]
¡û
>W2110595566
JAHDIU010000002
Bacteroidota
Flavobacterium sp. D11R37 [JAHDIU]
349364
349279
-
Ser
TGA
[ENA]
¡û
>W2110668869
JAICCF010000001
Bacteroidota
Chitinophaga sp. B61 [JAICCF]
583505
583590
+
Ser
TGA
[ENA]
¡û
>C201116689
CP042831
Bacteroidota
Flavobacterium sp. XS-5 [CP042831]
3061412
3061497
+
Ser
TGA
-
¡û
>C201212182
CP048113
Bacteroidota
Chitinophaga sp. H33E-04 [CP048113]
3232596
3232681
+
Ser
TGA
-
¡û
>C201212207
CP048113
Bacteroidota
Chitinophaga sp. H33E-04 [CP048113]
7391583
7391498
-
Ser
TGA
-
¡û
>C211331727
CP074436
Bacteroidota
Polaribacter sp. Q13 [CP074436]
1807430
1807345
-
Ser
TGA
-
¡û
>C241114894
CP047026
Bacteroidota
Polaribacter sp. L3A8 [CP047026]
4052147
4052232
+
Ser
TGA
-
¡û
>C241281577
CP128362
Bacteroidota
Chitinophaga sp. LS1 [CP128362]
8561363
8561448
+
Ser
TGA
-
¡û
>C241281580
CP128362
Bacteroidota
Chitinophaga sp. LS1 [CP128362]
7523320
7523234
-
Ser
TGA
-
¡û
>C241352851
CP139972
Bacteroidota
Chitinophaga sancti HAMBI_1988 [CP139972]
3450678
3450766
+
Ser
TGA
-
¡û
>C241352888
CP139972
Bacteroidota
Chitinophaga sancti HAMBI_1988 [CP139972]
2529343
2529256
-
Ser
TGA
-
¡û
>C241354804
CP140154
Bacteroidota
Chitinophaga sancti ATCC 23090 [CP140154]
8306855
8306942
+
Ser
TGA
-
¡û
>C241354816
CP140154
Bacteroidota
Chitinophaga sancti ATCC 23090 [CP140154]
7385519
7385431
-
Ser
TGA
-
¡û
>C10103748
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
8369048
8369133
+
Ser
TGA
[Ensembl]
¡û
>C10103759
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
3582544
3582459
-
Ser
TGA
[Ensembl]
¡û
>W1511296867
JPDI01000001
Bacteroidota
Polaribacter sp. Hel1_33_49 [JPDI]
1426033
1426120
+
Ser
TGA
[ENA]
¡û
>C11117909
CP002545
Bacteroidota
Pseudopedobacter saltans DSM 12145 [CP002545]
1289216
1289301
+
Ser
TGA
[Ensembl]
¡û
>C11117942
CP002545
Bacteroidota
Pseudopedobacter saltans DSM 12145 [CP002545]
1613538
1613453
-
Ser
TGA
[Ensembl]
¡û
>W11140056
AEKX01000005
Bacteroidota
Pseudopedobacter saltans DSM 12145 [AEKX]
121550
121635
+
Ser
TGA
[ENA]
¡û
>W11140061
AEKX01000006
Bacteroidota
Pseudopedobacter saltans DSM 12145 [AEKX]
268916
269001
+
Ser
TGA
[ENA]
¡û
>W1610535006
JRLV01000003
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
107833
107746
-
Ser
TGA
[ENA]
¡û
>W1710579979
FPIZ01000001
Bacteroidota
Chitinophaga sancti [FPIZ]
507182
507269
+
Ser
TGA
[ENA]
¡û
>W1710580024
FPIZ01000030
Bacteroidota
Chitinophaga sancti [FPIZ]
2371
2283
-
Ser
TGA
[ENA]
¡û
>W1710637242
JRLV01000003
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
107833
107746
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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