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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49736 (77 seq.)
>W1710865181
LMGL01000003
Actinomycetota
Microbacterium sp. Root166 [LMGL]
171705
171618
-
Ser
GGA
[ENA]
¡û
>W1710866731
LMHS01000001
Actinomycetota
Microbacterium sp. Root180 [LMHS]
483806
483719
-
Ser
GGA
[ENA]
¡û
>WENV010905
AACY020295928
Marine microbial communities from Global Ocean Sampling (GOS)
154
65
-
Ser
GGA
[ENA]
>WENV180098877
MTBK01272670
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
741
828
+
Ser
GGA
[ENA]
¡û
>WENV180356361
OBNK01018166
[OBNK] sediment metagenome; sediment
187
274
+
Ser
GGA
[ENA]
¡û
>WENV180380393
OBOQ01045829
[OBOQ] marine metagenome; Fridge
177
264
+
Ser
GGA
[ENA]
¡û
>WENV180641946
OCRN01111204
[OCRN] marine metagenome; ENVO:00002010, 'SEA WATER
312
225
-
Ser
GGA
[ENA]
¡û
>WENV180692556
OCZS010610747
[OCZS] soil metagenome; soil
195
282
+
Ser
GGA
[ENA]
¡û
>WENV181370796
OFQT01011656
[OFQT] freshwater metagenome; Freshwater Lake
301
214
-
Ser
GGA
[ENA]
¡û
>W141256110
CBVQ010000264
Actinomycetota
Microbacterium sp. C448 [CBVQ]
167
80
-
Ser
GGA
[ENA]
¡û
>WENV183726243
PJQF01133934
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
51
139
+
Ser
GGA
[ENA]
¡û
>WENV183728512
PJTQ01000097
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
25036
24949
-
Ser
GGA
[ENA]
¡û
>WENV183737268
PJUD01002335
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
5118
5031
-
Ser
GGA
[ENA]
¡û
>WENV183740348
PJUF01001301
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
7015
6928
-
Ser
GGA
[ENA]
¡û
>WENV170552185
CXWJ01043810
[CXWJ] wastewater metagenome; activated sludge
1631
1544
-
Ser
GGA
[ENA]
¡û
>WENV170975080
MTKY01090467
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
243
328
+
Ser
GGA
[ENA]
¡û
>WENV170979338
MTKZ01085114
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1431
1516
+
Ser
GGA
[ENA]
¡û
>C191144002
CP035494
Actinomycetota
Microbacterium protaetiae DFW100M-13 [CP035494]
339110
339196
+
Ser
GGA
-
¡û
>WENV002325
AACY020065160
Marine microbial communities from Global Ocean Sampling (GOS)
202
115
-
Ser
GGA
[ENA]
>W1910857526
NBWZ01000001
Actinomycetota
Subtercola boreus K300 [NBWZ]
650593
650506
-
Ser
GGA
[ENA]
¡û
>W1910857535
NBXA01000006
Actinomycetota
Subtercola boreus P27444 [NBXA]
91693
91606
-
Ser
GGA
[ENA]
¡û
>W1910857585
NBXB01000011
Actinomycetota
Subtercola boreus P27479 [NBXB]
40805
40718
-
Ser
GGA
[ENA]
¡û
>W1910857623
NBXC01000007
Actinomycetota
Subtercola boreus P27924 [NBXC]
19140
19053
-
Ser
GGA
[ENA]
¡û
>W1910857671
NBXD01000007
Actinomycetota
Subtercola boreus P27979 [NBXD]
19140
19053
-
Ser
GGA
[ENA]
¡û
>W1910857709
NBXE01000007
Actinomycetota
Subtercola boreus P28004 [NBXE]
19140
19053
-
Ser
GGA
[ENA]
¡û
>W1911075277
NMUM01000011
Actinomycetota
Microbacterium lacus SDZm4 [NMUM]
58327
58241
-
Ser
GGA
[ENA]
¡û
>W1911075335
NMUN01000007
Actinomycetota
Microbacterium sp. BR1 [NMUN]
58245
58332
+
Ser
GGA
[ENA]
¡û
>W1911798603
QYRT01000065
Actinomycetota
Subtercola vilae DB165 [QYRT]
513
426
-
Ser
GGA
[ENA]
¡û
>W1810121355
PHUH01000001
Actinomycetota
Microcella sp. HL-107 [PHUH]
2056865
2056778
-
Ser
GGA
[ENA]
¡û
>W1810248587
PQBR01000006
Actinomycetota
Microbacterium sp. CJ77 [PQBR]
237483
237396
-
Ser
GGA
[ENA]
¡û
>W1810277331
PSTT01000071
Actinomycetota
Subtercola sp. Z020 [PSTT]
152612
152697
+
Ser
GGA
[ENA]
¡û
>W1810514195
QBUG01000004
Actinomycetota
Promicromonospora sp. AC04 [QBUG]
456732
456817
+
Ser
GGA
[ENA]
¡û
>W1810570369
QEIJ01000004
Actinomycetota
Microbacterium sp. Gd 4-13 [QEIJ]
248765
248679
-
Ser
GGA
[ENA]
¡û
>W1810702160
QMGE01000108
Actinomycetota
Cellulomonas sp. K38 [QMGE]
1810
1895
+
Ser
GGA
[ENA]
¡û
>W2010321846
CACSKB010000004
Actinomycetota
Microbacterium sp. 18062 [CACSKB]
4744
4829
+
Ser
GGA
[ENA]
¡û
>W2010534544
JAAOZB010000002
Actinomycetota
Microbacterium halimionae CECT 8593 [JAAOZB]
146482
146395
-
Ser
GGA
[ENA]
¡û
>W2010561680
JAASRV010000003
Actinomycetota
Microbacterium endophyticum CECT 8354 [JAASRV]
181
94
-
Ser
GGA
[ENA]
¡û
>W2010667445
JACBYT010000001
Actinomycetota
Lysinimonas sp. SLBN-160 [JACBYT]
2517613
2517698
+
Ser
GGA
[ENA]
¡û
>W2010668295
JACBZK010000001
Actinomycetota
Microbacterium sp. 3290 [JACBZK]
2504413
2504500
+
Ser
GGA
[ENA]
¡û
>W2010669410
JACCAI010000001
Actinomycetota
Microbacterium pumilum ZKA30 [JACCAI]
3579324
3579411
+
Ser
GGA
[ENA]
¡û
>W2010691939
JACGWY010000001
Actinomycetota
Microbacterium halimionae DSM 27576 [JACGWY]
606875
606788
-
Ser
GGA
[ENA]
¡û
>W2010715474
JACHWQ010000001
Actinomycetota
Microbacterium endophyticum DSM 27099 [JACHWQ]
728857
728944
+
Ser
GGA
[ENA]
¡û
>W2010936324
NBXB01000011
Actinomycetota
Subtercola boreus P27479 [NBXB]
40805
40718
-
Ser
GGA
[ENA]
¡û
>W2010936362
NBXC01000007
Actinomycetota
Subtercola boreus P27924 [NBXC]
19140
19053
-
Ser
GGA
[ENA]
¡û
>W2010936410
NBXD01000007
Actinomycetota
Subtercola boreus P27979 [NBXD]
19140
19053
-
Ser
GGA
[ENA]
¡û
>W2010936448
NBXE01000007
Actinomycetota
Subtercola boreus P28004 [NBXE]
19140
19053
-
Ser
GGA
[ENA]
¡û
>W2011004524
NMUM01000011
Actinomycetota
Microbacterium lacus SDZm4 [NMUM]
58327
58241
-
Ser
GGA
[ENA]
¡û
>W2011004582
NMUN01000007
Actinomycetota
Microbacterium sp. BR1 [NMUN]
58245
58332
+
Ser
GGA
[ENA]
¡û
>W2011343571
QYRT01000065
Actinomycetota
Subtercola vilae DB165 [QYRT]
513
426
-
Ser
GGA
[ENA]
¡û
>W2011389179
RBXJ01000002
Actinomycetota
Microbacterium sp. AG1240 [RBXJ]
249405
249319
-
Ser
GGA
[ENA]
¡û
>W2011431284
RJAD01000003
Actinomycetota
Microbacterium sp. LAM7116 [RJAD]
470937
471023
+
Ser
GGA
[ENA]
¡û
>W2012017793
VFMR01000001
Actinomycetota
Microbacterium sp. SLBN-146 [VFMR]
2061560
2061473
-
Ser
GGA
[ENA]
¡û
>W2012039258
VIKT02000021
Actinomycetota
Chryseoglobus sp. KN1116 [VIKT]
34169
34082
-
Ser
GGA
[ENA]
¡û
>W2012125388
VRSV01000001
Actinomycetota
Microbacterium hatanonis JCM14558 [VRSV]
313767
313681
-
Ser
GGA
[ENA]
¡û
>W2012210454
VYUY01000018
Actinomycetota
Microbacterium sp. L-033 [VYUY]
131172
131259
+
Ser
GGA
[ENA]
¡û
>W2110024083
BMGP01000001
Actinomycetota
Subtercola lobariae CGMCC 1.12976 [BMGP]
300461
300376
-
Ser
GGA
[ENA]
¡û
>W2110201587
JACDTW010000002
Actinomycetota
Subtercola lobariae 9583b [JACDTW]
596472
596557
+
Ser
GGA
[ENA]
¡û
>W2110259352
JACSPM010000002
Actinomycetota
Microbacterium sp. Sa1CUA4 [JACSPM]
151376
151462
+
Ser
GGA
[ENA]
¡û
>W2110260683
JACSQP010000001
Actinomycetota
Microbacterium sp. Sa4CUA7 [JACSQP]
264418
264331
-
Ser
GGA
[ENA]
¡û
>W2110481117
JAFDSS010000001
Actinomycetota
Microbacterium terrae DSM 8610 [JAFDSS]
612040
611953
-
Ser
GGA
[ENA]
¡û
>W2110504416
JAFIWA010000002
Actinomycetota
Microbacterium flavescens JCM 3877 [JAFIWA]
258732
258646
-
Ser
GGA
[ENA]
¡û
>W2110574472
JAGTTN010000001
Actinomycetota
Microbacterium sp. BWT-G7 [JAGTTN]
532900
532987
+
Ser
GGA
[ENA]
¡û
>C201145438
CP044231
Actinomycetota
Microbacterium sp. ST-M6 [CP044231]
780754
780669
-
Ser
GGA
-
¡û
>C201224484
CP049255
Actinomycetota
Microbacterium endophyticum DSM 27099 [CP049255]
2175896
2175809
-
Ser
GGA
-
¡û
>C201298241
CP058670
Actinomycetota
Chryseoglobus sp. CTD02-10-2 [CP058670]
2253558
2253645
+
Ser
GGA
-
¡û
>C211154323
CP061846
Actinomycetota
Chryseoglobus sp. 28M-23 [CP061846]
2220493
2220580
+
Ser
GGA
-
¡û
>C211315128
CP072876
Actinomycetota
Microbacterium sp. NIBRBAC000506063 [CP072876]
1761166
1761252
+
Ser
GGA
-
¡û
>C231027528
AP027141
Actinomycetota
Microbacterium terricola KV-448 [AP027141]
2206273
2206358
+
Ser
GGA
-
¡û
>C231248192
CP087997
Actinomycetota
Subtercola sp. AK-R2A1-2 [CP087997]
2776432
2776519
+
Ser
GGA
-
¡û
>C231510999
CP107222
Actinomycetota
Microbacterium terricola JCM 14903 [CP107222]
856788
856703
-
Ser
GGA
-
¡û
>W2310022215
BSES01000001
Actinomycetota
Microbacterium terrae VKM Ac-1945 [BSES]
675311
675224
-
Ser
GGA
[ENA]
¡û
>W1511528958
JYIZ01000057
Actinomycetota
Microbacterium terrae DSM 12510 [JYIZ]
374722
374635
-
Ser
GGA
[ENA]
¡û
>WENV050960
AACY022918143
Marine microbial communities from Global Ocean Sampling (GOS)
314
401
+
Ser
GGA
[ENA]
>W1610727527
LMGL01000003
Actinomycetota
Microbacterium sp. Root166 [LMGL]
171705
171618
-
Ser
GGA
[ENA]
¡û
>W1610729077
LMHS01000001
Actinomycetota
Microbacterium sp. Root180 [LMHS]
483806
483719
-
Ser
GGA
[ENA]
¡û
>W1710575733
FOZJ01000003
Actinomycetota
Microbacterium sp. cf046 [FOZJ]
818432
818347
-
Ser
GGA
[ENA]
¡û
>W1710599987
FTPO01000001
Actinomycetota
Microbacterium sp. RU33B [FTPO]
527727
527640
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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