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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49767 (32 seq.)
>C025665
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1385723
1385634
-
Leu
TAA
-
¡û
>C025785
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
1406546
1406635
+
Leu
TAA
[Ensembl]
¡û
>W141082649
AUNF01000018
Thermotogota
Thermotoga sp. A7A [AUNF]
41876
41965
+
Leu
TAA
[ENA]
¡û
>WENV181408589
OGCH01006137
[OGCH] hot springs metagenome; hot springs
2320
2409
+
Leu
TAA
[ENA]
¢þ
>C08010898
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1470987
1471076
+
Leu
TAA
[Ensembl]
¡û
>WENV170676186
LDZR01001464
[LDZR] terrestrial metagenome; oil reservoir sample K2
324
235
-
Leu
TAA
[ENA]
¢þ
>WENV170676775
LDZS01002220
[LDZS] terrestrial metagenome; oil reservoir sample K3
664
575
-
Leu
TAA
[ENA]
¢þ
>W09106546
AAWB01000003
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
29231
29320
+
Leu
TAA
[ENA]
¡û
>W09107423
ABIJ01000006
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
103841
103930
+
Leu
TAA
[ENA]
¡û
>W09112215
ABXR01000008
Thermotogota
Marinitoga piezophila KA3 [ABXR]
23169
23080
-
Leu
TAA
[ENA]
¡û
>C141011526
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
1429527
1429616
+
Leu
TAA
-
¡û
>C151004275
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
1447427
1447516
+
Leu
TAA
[Ensembl]
¡û
>C151004317
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
1398439
1398528
+
Leu
TAA
[Ensembl]
¡û
>C151074625
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
1375711
1375622
-
Leu
TAA
[Ensembl]
¡û
>C151076979
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
1385739
1385650
-
Leu
TAA
[Ensembl]
¡û
>C151077025
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
1385739
1385650
-
Leu
TAA
[Ensembl]
¡û
>W10105829
ACXW01000002
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
213347
213258
-
Leu
TAA
[ENA]
¡û
>C10113497
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
1430798
1430887
+
Leu
TAA
[Ensembl]
¡û
>W11108149
ACXW01000002
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
213347
213258
-
Leu
TAA
[ENA]
¡û
>W11180809
AGIJ01000002
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
33238
33149
-
Leu
TAA
[ENA]
¡û
>W121062198
AJII01000011
Thermotogota
Thermotoga sp. EMP [AJII]
328073
328162
+
Leu
TAA
[ENA]
¡û
>C131012515
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
1385741
1385652
-
Leu
TAA
-
¡û
>W1610540330
JSFG01000009
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
34643
34732
+
Leu
TAA
[ENA]
¡û
>W1610540422
JSFI01000007
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
34131
34220
+
Leu
TAA
[ENA]
¡û
>W1610540492
JSFJ01000015
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
247859
247770
-
Leu
TAA
[ENA]
¡û
>W1610612932
LGFG01000216
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
324
235
-
Leu
TAA
[ENA]
¡û
>W1610613165
LGFM01000089
Thermotogota
Thermotoga sp. 47_83 [LGFM]
664
575
-
Leu
TAA
[ENA]
¡û
>W1710643351
JSFG01000009
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
34643
34732
+
Leu
TAA
[ENA]
¡û
>W1710643443
JSFI01000007
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
34131
34220
+
Leu
TAA
[ENA]
¡û
>W1710643513
JSFJ01000015
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
247859
247770
-
Leu
TAA
[ENA]
¡û
>W1710734214
LGFG01000216
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
324
235
-
Leu
TAA
[ENA]
¡û
>W1710734372
LGFM01000089
Thermotogota
Thermotoga sp. 47_83 [LGFM]
664
575
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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