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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.498533 (31 seq.)
>W131001174
AGWM01000002
Actinomycetota
Actinotignum schaalii FB123-CNA-2 [AGWM]
216177
216250
+
Gly
CCC
[ENA]
¡û
>W1710899487
LNIZ01000008
Actinomycetota
Trueperella bernardiae [LNIZ]
94463
94536
+
Gly
CCC
[ENA]
¡û
>W1711184938
LWMY01000031
Actinomycetota
Trueperella sp. HMSC08H06 [LWMY]
26201
26274
+
Gly
CCC
[ENA]
¡û
>W1711185089
LWNB01000051
Actinomycetota
Trueperella sp. HMSC08B05 [LWNB]
25780
25853
+
Gly
CCC
[ENA]
¡û
>W1711312360
MASX01000026
Actinomycetota
Actinobaculum suis [MASX]
8950
9023
+
Gly
CCC
[ENA]
¡û
>WENV182636420
OJKZ01007036
[OJKZ] metagenome; surface
1391
1464
+
Gly
CCC
[ENA]
¢þ
>W141284172
JALQ01000007
Actinomycetota
Trueperella pyogenes MS249 [JALQ]
621
548
-
Gly
CCC
[ENA]
¡û
>WENV183707388
PDWI01008199
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2774
2847
+
Gly
CCC
[ENA]
¢þ
>C181168813
CP028833
Actinomycetota
Trueperella pyogenes Arash114 [CP028833]
1802511
1802439
-
Gly
CCC
-
¡û
>C181212678
LS483427
Actinomycetota
Arcanobacterium haemolyticum NCTC8452 [LS483427]
1601135
1601208
+
Gly
CCC
-
¡û
>C191114704
CP033902
Actinomycetota
Trueperella pyogenes TP1 [CP033902]
2050321
2050248
-
Gly
CCC
-
¡û
>C191114792
CP033904
Actinomycetota
Trueperella pyogenes TP3 [CP033904]
1721550
1721622
+
Gly
CCC
-
¡û
>W09121363
ACFG01000004
Actinomycetota
Gleimia coleocanis DSM 15436 [ACFG]
308718
308789
+
Gly
CCC
[ENA]
¡û
>W1910236968
FPJH01000003
Actinomycetota
Arcanobacterium urinimassiliense Marseille-P3248 [FPJH]
34571
34644
+
Gly
CCC
[ENA]
¡û
>W1910340079
FTLO01000006
Actinomycetota
Actinotignum timonense type strain: Marseille-P2803 [FTLO]
38550
38623
+
Gly
CCC
[ENA]
¡û
>W1911653707
QDIE01000036
Actinomycetota
Actinotignum sanguinis DSM 26039 [QDIE]
12649
12722
+
Gly
CCC
[ENA]
¡û
>W1810085248
PESV01000003
Actinomycetota
Trueperella pyogenes Bu5 [PESV]
231609
231681
+
Gly
CCC
[ENA]
¡û
>W1810187918
PKHY01000002
Actinomycetota
Trueperella bernardiae UMB0116 [PKHY]
6613
6540
-
Gly
CCC
[ENA]
¡û
>W1810192517
PKMD01000002
Actinomycetota
Actinotignum timonense UMB0063 [PKMD]
21785
21712
-
Gly
CCC
[ENA]
¡û
>W1810192565
PKME01000002
Actinomycetota
Actinotignum timonense UMB0086 [PKME]
21782
21709
-
Gly
CCC
[ENA]
¡û
>W1810484085
QASM01000003
Actinomycetota
Trueperella pyogenes SH01 [QASM]
83771
83843
+
Gly
CCC
[ENA]
¡û
>C151015777
CP007003
Actinomycetota
Trueperella pyogenes TP8 [CP007003]
2101127
2101200
+
Gly
CCC
[Ensembl]
¡û
>C151026366
CP007519
Actinomycetota
Trueperella pyogenes TP6375 [CP007519]
1802613
1802540
-
Gly
CCC
[Ensembl]
¡û
>C151037574
CP008802
Actinomycetota
Actinotignum schaalii CCUG 27420 [CP008802]
1786576
1786503
-
Gly
CCC
[Ensembl]
¡û
>C151096850
CP012649
Actinomycetota
Trueperella pyogenes 2012CQ-ZSH [CP012649]
458472
458545
+
Gly
CCC
-
¡û
>C10100483
CP002045
Actinomycetota
Arcanobacterium haemolyticum DSM 20595 [CP002045]
610920
610847
-
Gly
CCC
[Ensembl]
¡û
>W1511351082
JRMX01000014
Actinomycetota
Arcanobacterium sp. S3PF19 [JRMX]
94656
94729
+
Gly
CCC
[ENA]
¡û
>W1610759890
LNIZ01000008
Actinomycetota
Trueperella bernardiae [LNIZ]
94463
94536
+
Gly
CCC
[ENA]
¡û
>W1611057413
MASX01000026
Actinomycetota
Actinobaculum suis [MASX]
8950
9023
+
Gly
CCC
[ENA]
¡û
>W1710514253
FNAU01000008
Actinomycetota
Actinobaculum suis [FNAU]
2479
2406
-
Gly
CCC
[ENA]
¡û
>W1710743619
LGYI01000002
Actinomycetota
Trueperella bernardiae [LGYI]
6623
6550
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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