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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.498750 (103 seq.)
>W1710878862
LMRH01000002
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
635327
635256
-
Cys
GCA
[ENA]
¡û
>W1710878865
LMRH01000002
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
634703
634632
-
Cys
GCA
[ENA]
¡û
>W1710914197
LNTD01000229
Actinomycetota
Cellulomonas sp. B6 [LNTD]
16651
16580
-
Cys
GCA
[ENA]
¡û
>W131053514
ANAC01000033
Actinomycetota
Nocardiopsis alba DSM 43377 [ANAC]
18024
18097
+
Cys
GCA
[ENA]
¡û
>W131054864
ANBB01000044
Actinomycetota
Nocardiopsis potens DSM 45234 [ANBB]
31627
31698
+
Cys
GCA
[ENA]
¡û
>W131055111
ANBF01000169
Actinomycetota
Nocardiopsis salina YIM 90010 [ANBF]
31487
31414
-
Cys
GCA
[ENA]
¡û
>W131098830
AOSG01000059
Actinomycetota
Thermobifida fusca TM51 [AOSG]
4232
4303
+
Cys
GCA
[ENA]
¡û
>W131217148
ATWM01000002
Actinomycetota
Serinicoccus marinus DSM 15273 [ATWM]
140895
140966
+
Cys
GCA
[ENA]
¡û
>W131230342
AUHN01000008
Actinomycetota
Jonesia quinghaiensis DSM 15701 [AUHN]
288484
288413
-
Cys
GCA
[ENA]
¡û
>W1711346026
MCOK01000001
Actinomycetota
Nocardiopsis sinuspersici [MCOK]
3454188
3454259
+
Cys
GCA
[ENA]
¡û
>W1711491948
MKJZ01000034
Actinomycetota
Serinicoccus sp. CUA-874 [MKJZ]
300675
300746
+
Cys
GCA
[ENA]
¡û
>W1711492035
MKKB01000222
Actinomycetota
Kytococcus sp. CUA-901 [MKKB]
34362
34435
+
Cys
GCA
[ENA]
¡û
>W1711492248
MKKF01000052
Actinomycetota
Serinicoccus sp. CNJ-927 [MKKF]
7370
7299
-
Cys
GCA
[ENA]
¡û
>W1711503095
MKTH01000014
Actinomycetota
Cellulomonas sp. 73-92 [MKTH]
148443
148372
-
Cys
GCA
[ENA]
¡û
>W1711503146
MKTI01000010
Actinomycetota
Cellulomonas sp. 73-145 [MKTI]
25455
25384
-
Cys
GCA
[ENA]
¡û
>W1712056174
NFZP01000044
Actinomycetota
Cellulomonas iranensis [NFZP]
31618
31689
+
Cys
GCA
[ENA]
¡û
>C025596
CP000088
Actinomycetota
Thermobifida fusca YX [CP000088]
2476669
2476739
+
Cys
GCA
[Ensembl]
¡û
>WENV180103018
OAPA01000119
[OAPA] marine metagenome; ENVO:00002010
3630
3559
-
Cys
GCA
[ENA]
¢þ
>WENV180208941
OBAK01000386
[OBAK] marine metagenome; ENVO.00002150
2019
2090
+
Cys
GCA
[ENA]
¢þ
>WENV180212242
OBAN01001344
[OBAN] marine metagenome; ENVO 00002150
231
160
-
Cys
GCA
[ENA]
¢þ
>WENV180360492
OBNU01000206
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
5889
5960
+
Cys
GCA
[ENA]
¢þ
>WENV180361744
OBNW01000234
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
4841
4912
+
Cys
GCA
[ENA]
¢þ
>WENV180365020
OBOB01003184
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
353
282
-
Cys
GCA
[ENA]
¢þ
>WENV180367951
OBOF01012235
[OBOF] marine metagenome; ENVO:00002010
331
402
+
Cys
GCA
[ENA]
¢þ
>WENV180376634
OBOM01043079
[OBOM] marine metagenome; Seawater
432
503
+
Cys
GCA
[ENA]
¢þ
>WENV180382039
OBOS01083591
[OBOS] marine metagenome; ENVO 00002150
336
407
+
Cys
GCA
[ENA]
¢þ
>WENV181120602
OEFK01016328
[OEFK] marine metagenome; ENVO:00002010 seawater
168
97
-
Cys
GCA
[ENA]
¢þ
>W141153000
AXCW01000031
Actinomycetota
Actinotalea ferrariae CF5-4 [AXCW]
12153
12224
+
Cys
GCA
[ENA]
¡û
>W141216130
AZUQ01000001
Actinomycetota
Haloglycomyces albus DSM 45210 [AZUQ]
2773810
2773883
+
Cys
GCA
[ENA]
¡û
>W141236346
BAZE01000007
Actinomycetota
Nocardiopsis alba TP-A0876 [BAZE]
10637
10564
-
Cys
GCA
[ENA]
¡û
>W141279315
JAGF01000001
Actinomycetota
Cellulomonas sp. KRMCY2 [JAGF]
3645182
3645253
+
Cys
GCA
[ENA]
¡û
>WENV183749671
PPFU01197989
[PPFU] hypolithon metagenome; Antarctic Hypolithon
857
928
+
Cys
GCA
[ENA]
¢þ
>C181055895
CP022038
Actinomycetota
Jonesia denitrificans FDAARGOS_301 [CP022038]
2397247
2397318
+
Cys
GCA
-
¡û
>C181064882
CP022434
Actinomycetota
Nocardiopsis dassonvillei HZNU_N_1 [CP022434]
2175292
2175220
-
Cys
GCA
-
¡û
>C191183664
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
1507189
1507260
+
Cys
GCA
-
¡û
>W09108319
ABTE01000001
Actinomycetota
Beutenbergia cavernae DSM 12333 [ABTE]
344760
344689
-
Cys
GCA
[ENA]
¡û
>W09108537
ABTJ01000013
Actinomycetota
Cellulomonas flavigena DSM 20109 [ABTJ]
13050
13121
+
Cys
GCA
[ENA]
¡û
>W09109171
ABUA01000013
Actinomycetota
Jonesia denitrificans DSM 20603 [ABUA]
14795
14868
+
Cys
GCA
[ENA]
¡û
>W09109319
ABUD01000012
Actinomycetota
Kytococcus sedentarius DSM 20547 [ABUD]
84438
84365
-
Cys
GCA
[ENA]
¡û
>W09109578
ABUI01000032
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [ABUI]
54734
54807
+
Cys
GCA
[ENA]
¡û
>W141768704
JOFJ01000014
Actinomycetota
Spirillospora albida [JOFJ]
64518
64589
+
Cys
GCA
[ENA]
¡û
>W1910568599
JEMR01000009
Actinomycetota
Thermobifida fusca GAFM-TF-ZOO [JEMR]
26666
26595
-
Cys
GCA
[ENA]
¡û
>W1911502870
OEQC01000001
Actinomycetota
Sanguibacter massiliensis Marseille-P3815 [OEQC]
623258
623187
-
Cys
GCA
[ENA]
¡û
>W1911539624
ONLN01000434
Actinomycetota
Thermobifida fusca [ONLN]
1343
1272
-
Cys
GCA
[ENA]
¡û
>W1911676924
QHHZ01000005
Actinomycetota
Nonomuraea sp. WAC 01424 [QHHZ]
362611
362538
-
Cys
GCA
[ENA]
¡û
>W1911783477
QXTH01000013
Actinomycetota
Antribacter gilvus CFH 30434 [QXTH]
125434
125363
-
Cys
GCA
[ENA]
¡û
>W1810046830
NYMS01000010
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
125724
125652
-
Cys
GCA
[ENA]
¡û
>W1810058206
PDJG01000001
Actinomycetota
Sanguibacter antarcticus DSM 18966 [PDJG]
994850
994779
-
Cys
GCA
[ENA]
¡û
>W1810058256
PDJH01000001
Actinomycetota
Flavimobilis soli DSM 21574 [PDJH]
255920
255849
-
Cys
GCA
[ENA]
¡û
>W1810058259
PDJH01000001
Actinomycetota
Flavimobilis soli DSM 21574 [PDJH]
255026
254955
-
Cys
GCA
[ENA]
¡û
>W1810090138
PGFF01000001
Actinomycetota
Diaminobutyricimonas aerilata DSM 27393 [PGFF]
1963523
1963452
-
Cys
GCA
[ENA]
¡û
>W1810102099
PGTZ01000011
Actinomycetota
Luteimicrobium subarcticum DSM 22413 [PGTZ]
151506
151577
+
Cys
GCA
[ENA]
¡û
>W1810173902
PJOK01000021
Actinomycetota
Nonomuraea indica DRQ-2 [PJOK]
74145
74218
+
Cys
GCA
[ENA]
¡û
>W1810173909
PJOK01000021
Actinomycetota
Nonomuraea indica DRQ-2 [PJOK]
34284
34213
-
Cys
GCA
[ENA]
¡û
>W1810189347
PKIZ01000001
Actinomycetota
Kytococcus schroeteri UMB1298 [PKIZ]
10742
10671
-
Cys
GCA
[ENA]
¡û
>W1810913830
QVNQ01000005
Actinomycetota
Actinomadura spongiicola LHW52907 [QVNQ]
456444
456515
+
Cys
GCA
[ENA]
¡û
>W1510001131
AXCX01000022
Actinomycetota
Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 [AXCX]
566
493
-
Cys
GCA
[ENA]
¡û
>W1510015580
BBRC01000032
Actinomycetota
Demequina lutea NBRC 106155 [BBRC]
1901
1830
-
Cys
GCA
[ENA]
¡û
>C10103455
CP001964
Actinomycetota
Cellulomonas flavigena DSM 20109 [CP001964]
1983804
1983733
-
Cys
GCA
[Ensembl]
¡û
>C10108052
CP001686
Actinomycetota
Kytococcus sedentarius DSM 20547 [CP001686]
1589173
1589246
+
Cys
GCA
[Ensembl]
¡û
>C10109708
CP002040
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [CP002040, CP002041]
1364229
1364156
-
Cys
GCA
[Ensembl]
¡û
>W1511584518
LAVL01000161
Actinomycetota
Nonomuraea sp. SBT364 [LAVL]
15770
15697
-
Cys
GCA
[ENA]
¡û
>W1511595521
LBMY01000001
Actinomycetota
Cellulomonas sp. FA1 [LBMY]
868372
868301
-
Cys
GCA
[ENA]
¡û
>W1610029634
AXCZ01000028
Actinomycetota
Cellulomonas bogoriensis 69B4 = DSM 16987 [AXCZ]
9650
9579
-
Cys
GCA
[ENA]
¡û
>W1610051354
BBGT01000751
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BBGT]
921
850
-
Cys
GCA
[ENA]
¡û
>W1610051379
BBGU01001080
Actinomycetota
Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 [BBGU]
302
375
+
Cys
GCA
[ENA]
¡û
>W1610051818
BBHH01000469
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BBHH]
294
223
-
Cys
GCA
[ENA]
¡û
>W1610051870
BBHK01000813
Actinomycetota
Cellulomonas denverensis JCM 14733 [BBHK]
338
409
+
Cys
GCA
[ENA]
¡û
>W1610057544
BBYJ01000012
Actinomycetota
Microtetraspora malaysiensis [BBYJ]
164027
164098
+
Cys
GCA
[ENA]
¡û
>W1610057677
BBYL01000015
Actinomycetota
Microtetraspora glauca [BBYL]
115477
115406
-
Cys
GCA
[ENA]
¡û
>W1610057712
BBYM01000007
Actinomycetota
Microtetraspora niveoalba [BBYM]
67744
67673
-
Cys
GCA
[ENA]
¡û
>W1610068091
BCRB01000015
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
41407
41336
-
Cys
GCA
[ENA]
¡û
>W1610068547
BCRK01000109
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
13907
13834
-
Cys
GCA
[ENA]
¡û
>W1610068933
BCRR01000113
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
9407
9480
+
Cys
GCA
[ENA]
¡û
>W1610069005
BCRT01000010
Actinomycetota
Sanguibacter suarezii NBRC 16159 [BCRT]
500384
500313
-
Cys
GCA
[ENA]
¡û
>W1610069008
BCRT01000010
Actinomycetota
Sanguibacter suarezii NBRC 16159 [BCRT]
484260
484189
-
Cys
GCA
[ENA]
¡û
>W1610073719
BCWB01000034
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BCWB]
108861
108790
-
Cys
GCA
[ENA]
¡û
>C131006704
CP003788
Actinomycetota
Nocardiopsis alba ATCC BAA-2165 [CP003788]
298059
298132
+
Cys
GCA
[Ensembl]
¡û
>W1610741208
LMRH01000002
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
635327
635256
-
Cys
GCA
[ENA]
¡û
>W1610741211
LMRH01000002
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
634703
634632
-
Cys
GCA
[ENA]
¡û
>W1610772556
LNTD01000229
Actinomycetota
Cellulomonas sp. B6 [LNTD]
16651
16580
-
Cys
GCA
[ENA]
¡û
>W1710027004
AXCZ01000028
Actinomycetota
Cellulomonas bogoriensis 69B4 = DSM 16987 [AXCZ]
9650
9579
-
Cys
GCA
[ENA]
¡û
>W1710047753
BBGT01000751
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BBGT]
921
850
-
Cys
GCA
[ENA]
¡û
>W1710048196
BBHH01000469
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BBHH]
294
223
-
Cys
GCA
[ENA]
¡û
>W1710048248
BBHK01000813
Actinomycetota
Cellulomonas denverensis JCM 14733 [BBHK]
338
409
+
Cys
GCA
[ENA]
¡û
>W1710050311
BBRJ01000002
Actinomycetota
Demequina sp. NBRC 110053 [BBRJ]
61577
61648
+
Cys
GCA
[ENA]
¡û
>W1710050458
BBRM01000002
Actinomycetota
Demequina sp. NBRC 110056 [BBRM]
328311
328240
-
Cys
GCA
[ENA]
¡û
>W1710054243
BBYJ01000012
Actinomycetota
Microtetraspora malaysiensis [BBYJ]
164027
164098
+
Cys
GCA
[ENA]
¡û
>W1710054376
BBYL01000015
Actinomycetota
Microtetraspora glauca [BBYL]
115477
115406
-
Cys
GCA
[ENA]
¡û
>W1710054411
BBYM01000007
Actinomycetota
Microtetraspora niveoalba [BBYM]
67744
67673
-
Cys
GCA
[ENA]
¡û
>W1710065464
BCRB01000015
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
41407
41336
-
Cys
GCA
[ENA]
¡û
>W1710065920
BCRK01000109
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
13907
13834
-
Cys
GCA
[ENA]
¡û
>W1710066306
BCRR01000113
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
9407
9480
+
Cys
GCA
[ENA]
¡û
>W1710066378
BCRT01000010
Actinomycetota
Sanguibacter suarezii NBRC 16159 [BCRT]
500384
500313
-
Cys
GCA
[ENA]
¡û
>W1710066381
BCRT01000010
Actinomycetota
Sanguibacter suarezii NBRC 16159 [BCRT]
484260
484189
-
Cys
GCA
[ENA]
¡û
>W1710070837
BCWB01000034
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BCWB]
108861
108790
-
Cys
GCA
[ENA]
¡û
>W1710510871
FMYH01000002
Actinomycetota
Sanguibacter gelidistatuariae ISLP-3 [FMYH]
232578
232649
+
Cys
GCA
[ENA]
¡û
>W1710510873
FMYH01000002
Actinomycetota
Sanguibacter gelidistatuariae ISLP-3 [FMYH]
244891
244962
+
Cys
GCA
[ENA]
¡û
>W1710545061
FOBF01000003
Actinomycetota
Nonomuraea pusilla [FOBF]
11450
11521
+
Cys
GCA
[ENA]
¡û
>W1710545064
FOBF01000003
Actinomycetota
Nonomuraea pusilla [FOBF]
66930
67003
+
Cys
GCA
[ENA]
¡û
>W1710566739
FOSE01000002
Actinomycetota
Cellulomonas sp. KH9 [FOSE]
166575
166504
-
Cys
GCA
[ENA]
¡û
>W1710588507
FQZK01000010
Actinomycetota
Nocardiopsis flavescens [FQZK]
67887
67960
+
Cys
GCA
[ENA]
¡û
>W1710610288
FYEZ01000001
Actinomycetota
Kytococcus aerolatus [FYEZ]
281780
281853
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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