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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.498806 (14 seq.)
>W1711257940
LYUD01000099
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
205480
205553
+
Gly
CCC
[ENA]
¡û
>WENV182510871
OIWK01007435
[OIWK] human gut metagenome; faeces
4953
5023
+
Gly
CCC
[ENA]
¢þ
>WENV183196544
OLPU01001507
[OLPU] human gut metagenome; faeces
11392
11322
-
Gly
CCC
[ENA]
¢þ
>WENV183253563
OLRJ01000034
[OLRJ] human gut metagenome; faeces
95027
94957
-
Gly
CCC
[ENA]
¢þ
>C181063300
CP022374
Alphaproteobacteria
Acetobacter oryzifermentans dm [CP022374]
765456
765529
+
Gly
CCC
-
¡û
>W1910007955
BDES01000007
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3188 [BDES]
33723
33796
+
Gly
CCC
[ENA]
¡û
>W1910008064
BDEU01000018
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3277 [BDEU]
1950
2023
+
Gly
CCC
[ENA]
¡û
>W1910008118
BDEV01000019
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3278 [BDEV]
2055
2128
+
Gly
CCC
[ENA]
¡û
>W1910008223
BDEX01000017
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3280 [BDEX]
2055
2128
+
Gly
CCC
[ENA]
¡û
>C10100702
AP011121
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01 [AP011121]
722017
722090
+
Gly
CCC
[Ensembl]
¡û
>C10100759
AP011128
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-03 [AP011128]
722011
722084
+
Gly
CCC
[Ensembl]
¡û
>C10100873
AP011170
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-12 [AP011170]
722011
722084
+
Gly
CCC
[Ensembl]
¡û
>C161031435
CP011120
Alphaproteobacteria
Acetobacter oryzifermentans SLV-7 [CP011120]
815056
815129
+
Gly
CCC
[Ensembl]
¡û
>W1611020412
LYUD01000099
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
205480
205553
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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