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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49893 (88 seq.)
>W1710919975
LNYC01000073
Gammaproteobacteria
Legionella geestiana [LNYC]
58152
58065
-
Ser
GGA
[ENA]
¡û
>W1711029710
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
1051915
1051828
-
Ser
GGA
[ENA]
¡û
>W1711065274
LSBQ01000015
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
63415
63502
+
Ser
GGA
[ENA]
¡û
>W1711126098
LUNZ01000023
Gammaproteobacteria
Idiomarina sp. REDSEA-S21_B4 [LUNZ]
53518
53605
+
Ser
GGA
[ENA]
¡û
>W1711356899
MDGT01000003
Gammaproteobacteria
Idiomarina sp. MD25a [MDGT]
835655
835742
+
Ser
GGA
[ENA]
¡û
>W131045183
AMRG01000007
Gammaproteobacteria
Idiomarina xiamenensis 10-D-4 [AMRG]
138885
138972
+
Ser
GGA
[ENA]
¡û
>W131239231
BANL01000019
Gammaproteobacteria
Idiomarina sp. 28-8 [BANL]
56145
56232
+
Ser
GGA
[ENA]
¡û
>C011051
AE017340
Gammaproteobacteria
Idiomarina loihiensis L2TR [AE017340]
1147610
1147523
-
Ser
GGA
[Ensembl]
¡û
>WENV180272949
OBEQ012432628
[OBEQ] groundwater metagenome; groundwater
466
550
+
Ser
GGA
[ENA]
¡û
>WENV180363287
OBNY01018836
[OBNY] marine metagenome; ENVO:00002010
444
357
-
Ser
GGA
[ENA]
¡û
>WENV181189923
OEOF01329120
[OEOF] activated sludge metagenome; Activated Sludge
13
100
+
Ser
GGA
[ENA]
¡û
>WENV181412502
OGCK01000933
[OGCK] hot springs metagenome; hot spring sediment
2228
2315
+
Ser
GGA
[ENA]
¡û
>W141273137
CCSB01000003
Gammaproteobacteria
Legionella massiliensis [CCSB]
749402
749315
-
Ser
GGA
[ENA]
¡û
>W141273895
CCVW01000003
Gammaproteobacteria
Legionella massiliensis [CCVW]
749402
749315
-
Ser
GGA
[ENA]
¡û
>WENV170112376
CEGE01004022
[CEGE] microbial mat metagenome; grass silage
106
193
+
Ser
GGA
[ENA]
¡û
>WENV170336506
CETA01015941
[CETA] marine metagenome genome assembly TARA_109_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
379
292
-
Ser
GGA
[ENA]
¡û
>WENV170361348
CETM01003410
[CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
158
71
-
Ser
GGA
[ENA]
¡û
>WENV170572698
FLOH01001174
[FLOH] marine metagenome; water
30623
30710
+
Ser
GGA
[ENA]
¡û
>WENV170577992
FSSH01004876
[FSSH] freshwater metagenome; drinking water
1056
1143
+
Ser
GGA
[ENA]
¡û
>WENV170692046
LFUG01009891
[LFUG] hypersaline lake metagenome; virus filtrate of water collected from the Namib Desert Eisfeld playa
203
290
+
Ser
GGA
[ENA]
¡û
>WENV170739952
LULR01000057
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
25486
25399
-
Ser
GGA
[ENA]
¡û
>WENV170744260
LULX01000055
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
53518
53605
+
Ser
GGA
[ENA]
¡û
>WENV170770876
LXNI01000151
[LXNI] sponge metagenome; marine sponge reef
14138
14051
-
Ser
GGA
[ENA]
¡û
>WENV170924603
MDTG01068563
[MDTG] marine metagenome; seawater
14
101
+
Ser
GGA
[ENA]
¡û
>WENV170927844
MDTG01123794
[MDTG] marine metagenome; seawater
91
4
-
Ser
GGA
[ENA]
¡û
>WENV170961196
MKWU01093852
[MKWU] sponge metagenome;
397
310
-
Ser
GGA
[ENA]
¡û
>C181059196
CP022133
Gammaproteobacteria
Idiomarina piscisalsi 10PY1A [CP022133]
1806214
1806127
-
Ser
GGA
-
¡û
>C181110274
CP025000
Gammaproteobacteria
Idiomarina sp. X4 [CP025000]
319512
319425
-
Ser
GGA
-
¡û
>C181146690
CP027188
Gammaproteobacteria
Idiomarina sp. OT37-5b [CP027188]
754598
754685
+
Ser
GGA
-
¡û
>C191159096
CP038271
Gammaproteobacteria
Legionella geestiana 1308 [CP038271]
271358
271271
-
Ser
GGA
-
¡û
>W141802160
JPER01000001
Gammaproteobacteria
Pseudidiomarina salinarum [JPER]
335966
335879
-
Ser
GGA
[ENA]
¡û
>W1910930928
NISX01000005
Gammaproteobacteria
Lacimicrobium alkaliphilum X13M-12 [NISX]
109729
109816
+
Ser
GGA
[ENA]
¡û
>W1911584838
PIPL01000001
Gammaproteobacteria
Aliidiomarina minuta MLST1 [PIPL]
1329903
1329816
-
Ser
GGA
[ENA]
¡û
>W1911585190
PIPS01000001
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
569812
569725
-
Ser
GGA
[ENA]
¡û
>W1911585321
PIPV01000001
Gammaproteobacteria
Idiomarina fontislapidosi F23 [PIPV]
96380
96467
+
Ser
GGA
[ENA]
¡û
>W1911585405
PIPW01000001
Gammaproteobacteria
Idiomarina halophila BH195 [PIPW]
179741
179654
-
Ser
GGA
[ENA]
¡û
>W1911585613
PIQA01000012
Gammaproteobacteria
Idiomarina piscisalsi TPS4-2 [PIQA]
66386
66473
+
Ser
GGA
[ENA]
¡û
>W1911585737
PIQD01000001
Gammaproteobacteria
Idiomarina salinarum ISL-52 [PIQD]
1033925
1034012
+
Ser
GGA
[ENA]
¡û
>W1911585819
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
214248
214335
+
Ser
GGA
[ENA]
¡û
>W1911585944
PIQH01000008
Gammaproteobacteria
Idiomarina tyrosinivorans CC-PW-9 [PIQH]
68694
68781
+
Ser
GGA
[ENA]
¡û
>W1911717887
QQTE01000009
Gammaproteobacteria
Idiomarina sp. HD9-110m-PIT-SAG05 [QQTE]
14930
15017
+
Ser
GGA
[ENA]
¡û
>W1810609572
QGUA01000001
Gammaproteobacteria
Idiomarina loihiensis H2.2 [QGUA]
327752
327665
-
Ser
GGA
[ENA]
¡û
>W1810671362
QJST01000001
Gammaproteobacteria
Idiomarina fontislapidosi CECT 5859 [QJST]
96348
96435
+
Ser
GGA
[ENA]
¡û
>W1810785224
QRBK01000001
Gammaproteobacteria
Idiomarina abyssalis 017G.2 [QRBK]
949123
949036
-
Ser
GGA
[ENA]
¡û
>W2010146575
CAAAHN010000004
Gammaproteobacteria
Legionella geestiana 1308 [CAAAHN]
161345
161258
-
Ser
GGA
[ENA]
¡û
>W2010347854
CADCXY010000001
Gammaproteobacteria
Idiomarina sp. CECT 9734 [CADCXY]
40480
40393
-
Ser
GGA
[ENA]
¡û
>W2010980530
NISX01000005
Gammaproteobacteria
Lacimicrobium alkaliphilum X13M-12 [NISX]
109729
109816
+
Ser
GGA
[ENA]
¡û
>W2011194231
PIPL01000001
Gammaproteobacteria
Aliidiomarina minuta MLST1 [PIPL]
1329903
1329816
-
Ser
GGA
[ENA]
¡û
>W2011194583
PIPS01000001
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
569812
569725
-
Ser
GGA
[ENA]
¡û
>W2011194714
PIPV01000001
Gammaproteobacteria
Idiomarina fontislapidosi F23 [PIPV]
96380
96467
+
Ser
GGA
[ENA]
¡û
>W2011194798
PIPW01000001
Gammaproteobacteria
Idiomarina halophila BH195 [PIPW]
179741
179654
-
Ser
GGA
[ENA]
¡û
>W2011195006
PIQA01000012
Gammaproteobacteria
Idiomarina piscisalsi TPS4-2 [PIQA]
66386
66473
+
Ser
GGA
[ENA]
¡û
>W2011195130
PIQD01000001
Gammaproteobacteria
Idiomarina salinarum ISL-52 [PIQD]
1033925
1034012
+
Ser
GGA
[ENA]
¡û
>W2011195212
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
214248
214335
+
Ser
GGA
[ENA]
¡û
>W2011195337
PIQH01000008
Gammaproteobacteria
Idiomarina tyrosinivorans CC-PW-9 [PIQH]
68694
68781
+
Ser
GGA
[ENA]
¡û
>W2011285932
QQTE01000009
Gammaproteobacteria
Idiomarina sp. HD9-110m-PIT-SAG05 [QQTE]
14930
15017
+
Ser
GGA
[ENA]
¡û
>W2011490947
RSFE01000001
Gammaproteobacteria
Pseudidiomarina sp. R04H25 [RSFE]
243949
244036
+
Ser
GGA
[ENA]
¡û
>W2011545446
SDJS01000001
Gammaproteobacteria
Idiomarina sp. 29L [SDJS]
109517
109604
+
Ser
GGA
[ENA]
¡û
>W2011648256
SNWT01000001
Gammaproteobacteria
Idiomarina sp. 017G [SNWT]
111457
111544
+
Ser
GGA
[ENA]
¡û
>W2011649200
SNXI01000013
Gammaproteobacteria
Idiomarina aquatica 18_TX [SNXI]
5804
5717
-
Ser
GGA
[ENA]
¡û
>W2011649455
SNXN01000001
Gammaproteobacteria
Idiomarina loihiensis E2 [SNXN]
327752
327665
-
Ser
GGA
[ENA]
¡û
>W2011652695
SNZY01000001
Gammaproteobacteria
Idiomarina sp. H2 [SNZY]
105383
105470
+
Ser
GGA
[ENA]
¡û
>W2011828591
UGNZ01000001
Gammaproteobacteria
Legionella geestiana NCTC12373 [UGNZ]
1079119
1079206
+
Ser
GGA
[ENA]
¡û
>W2012092669
VMNH01000032
Gammaproteobacteria
Sedimenticola selenatireducens BK-1 [VMNH]
21467
21380
-
Ser
GGA
[ENA]
¡û
>W2012353384
WJRO01000001
Gammaproteobacteria
Idiomarina loihiensis SN11 [WJRO]
143159
143246
+
Ser
GGA
[ENA]
¡û
>W2110023860
BMGJ01000006
Gammaproteobacteria
Lacimicrobium alkaliphilum CGMCC 1.12923 [BMGJ]
126894
126807
-
Ser
GGA
[ENA]
¡û
>W2110429028
JAEMOO010000018
Gammaproteobacteria
Idiomarina abyssalis KJE-1 [JAEMOO]
124094
124181
+
Ser
GGA
[ENA]
¡û
>W2110429078
JAEMOP010000002
Gammaproteobacteria
Idiomarina abyssalis KJE-2 [JAEMOP]
817888
817801
-
Ser
GGA
[ENA]
¡û
>W2110429190
JAEMOS010000001
Gammaproteobacteria
Idiomarina abyssalis KJE-3 [JAEMOS]
4702
4615
-
Ser
GGA
[ENA]
¡û
>W2110577361
JAGWDM010000003
Gammaproteobacteria
Idiomarina abyssalis CG1230 [JAGWDM]
118906
118993
+
Ser
GGA
[ENA]
¡û
>C201101386
CP041713
Gammaproteobacteria
Legionella geestiana HL-0438-4026 [CP041713]
164325
164238
-
Ser
GGA
-
¡û
>C211388127
CP081832
Gammaproteobacteria
Idiomarina abyssalis MSP-CT [CP081832]
807871
807958
+
Ser
GGA
-
¡û
>C231135860
CP074073
Gammaproteobacteria
Idiomarina loihiensis SN11 [CP074073]
1516329
1516242
-
Ser
GGA
-
¡û
>C231426269
CP100390
Gammaproteobacteria
Alkalimarinus sp. A2M4 [CP100390]
1896791
1896704
-
Ser
GGA
-
¡û
>C241006917
AP022839
Gammaproteobacteria
Legionella antarctica TUM19329 [AP022839]
1529234
1529147
-
Ser
GGA
-
¡û
>W2130039171
JAHZSS010000037
Gammaproteobacteria
Neiella sp. 126 [JAHZSS]
3490
3577
+
Ser
GGA
[ENA]
¡û
>C131016299
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
1147725
1147638
-
Ser
GGA
[Ensembl]
¡û
>W1610616458
LGOW01000001
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
81532
81619
+
Ser
GGA
[ENA]
¡û
>W1610621735
LHSG01000002
Gammaproteobacteria
Idiomarina zobellii [LHSG]
289127
289040
-
Ser
GGA
[ENA]
¡û
>W1610777873
LNYC01000073
Gammaproteobacteria
Legionella geestiana [LNYC]
58152
58065
-
Ser
GGA
[ENA]
¡û
>W1610877978
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
1051915
1051828
-
Ser
GGA
[ENA]
¡û
>W1610906063
LSBQ01000015
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
63415
63502
+
Ser
GGA
[ENA]
¡û
>W1610937031
LUNZ01000023
Gammaproteobacteria
Idiomarina sp. REDSEA-S21_B4 [LUNZ]
53518
53605
+
Ser
GGA
[ENA]
¡û
>W1710509862
FMXN01000003
Gammaproteobacteria
Pseudidiomarina indica [FMXN]
214849
214936
+
Ser
GGA
[ENA]
¡û
>W1710515741
FNCB01000002
Gammaproteobacteria
Idiomarina zobellii [FNCB]
289000
288913
-
Ser
GGA
[ENA]
¡û
>W1710577916
FPBE01000001
Gammaproteobacteria
Idiomarina abyssalis [FPBE]
82223
82310
+
Ser
GGA
[ENA]
¡û
>W1710741593
LGOW01000001
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
81532
81619
+
Ser
GGA
[ENA]
¡û
>W1710752608
LHSG01000002
Gammaproteobacteria
Idiomarina zobellii [LHSG]
289127
289040
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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