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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.498978 (136 seq.)
>W1711005750
LQNU01000055
Bacteroidota
Myroides marinus [LQNU]
27761
27834
+
Trp
CCA
[ENA]
¡û
>W1711005752
LQNU01000058
Bacteroidota
Myroides marinus [LQNU]
10391
10464
+
Trp
CCA
[ENA]
¡û
>W1711047384
LROZ01000001
Bacteroidota
Myroides odoratus [LROZ]
413309
413382
+
Trp
CCA
[ENA]
¡û
>W1711047412
LROZ01000006
Bacteroidota
Myroides odoratus [LROZ]
153547
153620
+
Trp
CCA
[ENA]
¡û
>W131176882
ARKJ01000025
Bacteroidota
Flavobacterium rivuli DSM 21788 [ARKJ]
203662
203589
-
Trp
CCA
[ENA]
¡û
>W131229191
AUGP01000017
Bacteroidota
Flavobacterium subsaxonicum DSM 21790 [AUGP]
275020
274947
-
Trp
CCA
[ENA]
¡û
>W1711715361
MTFE01000010
Bacteroidota
Cnuella takakiae [MTFE]
2248944
2249017
+
Trp
CCA
[ENA]
¡û
>WENV180010984
FLSI01055510
[FLSI] metagenome; saliva
152
223
+
Trp
CCA
[ENA]
¢þ
>W141042790
AMEU01000216
Bacteroidota
Capnocytophaga sp. oral taxon 326 oral taxon 326 str. F0382 [AMEU]
5521
5450
-
Trp
CCA
[ENA]
¡û
>WENV180550466
OCJA01030006
[OCJA] human oral metagenome; human oral
82
155
+
Trp
CCA
[ENA]
¢þ
>WENV180551478
OCJF01067394
[OCJF] human oral metagenome; human oral
89
16
-
Trp
CCA
[ENA]
¢þ
>WENV180698563
ODDH01019925
[ODDH] human metagenome; G_DNA_Buccal mucosa
319
390
+
Trp
CCA
[ENA]
¢þ
>WENV180718605
ODGG01024107
[ODGG] human metagenome; G_DNA_Buccal mucosa
346
417
+
Trp
CCA
[ENA]
¢þ
>WENV180720136
ODGJ01018216
[ODGJ] human metagenome; G_DNA_Tongue dorsum
1176
1247
+
Trp
CCA
[ENA]
¢þ
>WENV180750208
ODHS01000797
[ODHS] human metagenome; G_DNA_Supragingival plaque
867
940
+
Trp
CCA
[ENA]
¢þ
>WENV180751667
ODHS01101427
[ODHS] human metagenome; G_DNA_Supragingival plaque
73
2
-
Trp
CCA
[ENA]
¢þ
>WENV180755044
ODHU01009420
[ODHU] human metagenome; G_DNA_Supragingival plaque
271
200
-
Trp
CCA
[ENA]
¢þ
>WENV180765043
ODIB01014683
[ODIB] human metagenome; G_DNA_Supragingival plaque
826
897
+
Trp
CCA
[ENA]
¢þ
>WENV180777988
ODIM01000193
[ODIM] human metagenome; G_DNA_Supragingival plaque
25508
25579
+
Trp
CCA
[ENA]
¢þ
>WENV180809061
ODJK01003768
[ODJK] human metagenome; G_DNA_Subgingival plaque
1230
1301
+
Trp
CCA
[ENA]
¢þ
>WENV180809448
ODJK01018210
[ODJK] human metagenome; G_DNA_Subgingival plaque
6
79
+
Trp
CCA
[ENA]
¢þ
>WENV180822116
ODJT01000019
[ODJT] human metagenome; G_DNA_Supragingival plaque
47105
47034
-
Trp
CCA
[ENA]
¢þ
>WENV180845296
ODKT01000086
[ODKT] human metagenome; G_DNA_Supragingival plaque
19229
19302
+
Trp
CCA
[ENA]
¢þ
>WENV180845784
ODKT01002087
[ODKT] human metagenome; G_DNA_Supragingival plaque
9725
9654
-
Trp
CCA
[ENA]
¢þ
>WENV180846359
ODKT01009496
[ODKT] human metagenome; G_DNA_Supragingival plaque
2604
2533
-
Trp
CCA
[ENA]
¢þ
>WENV180846860
ODKT01026407
[ODKT] human metagenome; G_DNA_Supragingival plaque
1465
1536
+
Trp
CCA
[ENA]
¢þ
>WENV180846911
ODKT01029030
[ODKT] human metagenome; G_DNA_Supragingival plaque
771
844
+
Trp
CCA
[ENA]
¢þ
>WENV180859659
ODLD01002119
[ODLD] human metagenome; G_DNA_Supragingival plaque
3706
3777
+
Trp
CCA
[ENA]
¢þ
>WENV180859707
ODLD01002745
[ODLD] human metagenome; G_DNA_Supragingival plaque
1142
1213
+
Trp
CCA
[ENA]
¢þ
>WENV180859837
ODLD01005388
[ODLD] human metagenome; G_DNA_Supragingival plaque
3041
2968
-
Trp
CCA
[ENA]
¢þ
>WENV180881727
ODMA01060144
[ODMA] human metagenome; G_DNA_Supragingival plaque
92
165
+
Trp
CCA
[ENA]
¢þ
>WENV180922152
ODTJ01001558
[ODTJ] human metagenome; G_DNA_Supragingival plaque
13474
13403
-
Trp
CCA
[ENA]
¢þ
>WENV180922358
ODTJ01003019
[ODTJ] human metagenome; G_DNA_Supragingival plaque
6980
6909
-
Trp
CCA
[ENA]
¢þ
>WENV180924039
ODTK01000807
[ODTK] human metagenome; G_DNA_Supragingival plaque
30
103
+
Trp
CCA
[ENA]
¢þ
>WENV180924316
ODTK01003164
[ODTK] human metagenome; G_DNA_Supragingival plaque
1137
1208
+
Trp
CCA
[ENA]
¢þ
>WENV180924971
ODTK01028273
[ODTK] human metagenome; G_DNA_Supragingival plaque
72
1
-
Trp
CCA
[ENA]
¢þ
>WENV180930648
ODTP01000128
[ODTP] human metagenome; G_DNA_Tongue dorsum
24834
24763
-
Trp
CCA
[ENA]
¢þ
>WENV180938266
ODTX01001138
[ODTX] human metagenome; G_DNA_Supragingival plaque
13405
13334
-
Trp
CCA
[ENA]
¢þ
>WENV180938348
ODTX01001550
[ODTX] human metagenome; G_DNA_Supragingival plaque
12433
12362
-
Trp
CCA
[ENA]
¢þ
>WENV180939513
ODTX01046267
[ODTX] human metagenome; G_DNA_Supragingival plaque
30
103
+
Trp
CCA
[ENA]
¢þ
>WENV180944619
ODUC01026173
[ODUC] human metagenome; G_DNA_Supragingival plaque
970
1043
+
Trp
CCA
[ENA]
¢þ
>WENV180945603
ODUC01259351
[ODUC] human metagenome; G_DNA_Supragingival plaque
72
1
-
Trp
CCA
[ENA]
¢þ
>WENV180945673
ODUC01304916
[ODUC] human metagenome; G_DNA_Supragingival plaque
72
1
-
Trp
CCA
[ENA]
¢þ
>WENV180958574
ODUL01010250
[ODUL] human metagenome; G_DNA_Supragingival plaque
1446
1517
+
Trp
CCA
[ENA]
¢þ
>WENV180964300
ODUO01000952
[ODUO] human metagenome; G_DNA_Supragingival plaque
6178
6107
-
Trp
CCA
[ENA]
¢þ
>WENV180989411
ODVL01170936
[ODVL] human metagenome; G_DNA_Tongue dorsum
156
85
-
Trp
CCA
[ENA]
¢þ
>WENV180990590
ODVN01002509
[ODVN] human metagenome; G_DNA_Tongue dorsum
1287
1358
+
Trp
CCA
[ENA]
¢þ
>WENV180998275
ODVT01000128
[ODVT] human metagenome; G_DNA_Buccal mucosa
1137
1208
+
Trp
CCA
[ENA]
¢þ
>WENV180998932
ODVT01003554
[ODVT] human metagenome; G_DNA_Buccal mucosa
5264
5193
-
Trp
CCA
[ENA]
¢þ
>WENV180999570
ODVT01032383
[ODVT] human metagenome; G_DNA_Buccal mucosa
958
887
-
Trp
CCA
[ENA]
¢þ
>WENV181012141
ODWJ01025470
[ODWJ] human metagenome; G_DNA_Buccal mucosa
359
288
-
Trp
CCA
[ENA]
¢þ
>WENV181012660
ODWK01004685
[ODWK] human metagenome; G_DNA_Supragingival plaque
733
662
-
Trp
CCA
[ENA]
¢þ
>WENV181020242
ODWU01084886
[ODWU] human metagenome; G_DNA_Supragingival plaque
72
1
-
Trp
CCA
[ENA]
¢þ
>WENV181029645
ODXF01001415
[ODXF] human metagenome; G_DNA_Supragingival plaque
4797
4726
-
Trp
CCA
[ENA]
¢þ
>WENV181042765
ODXU01006946
[ODXU] human metagenome; G_DNA_Buccal mucosa
1295
1366
+
Trp
CCA
[ENA]
¢þ
>WENV181065615
ODYT01051008
[ODYT] human metagenome; G_DNA_Buccal mucosa
154
225
+
Trp
CCA
[ENA]
¢þ
>WENV181069891
OEAE01000032
[OEAE] human metagenome; G_DNA_Supragingival plaque
11383
11454
+
Trp
CCA
[ENA]
¢þ
>WENV181070078
OEAE01000205
[OEAE] human metagenome; G_DNA_Supragingival plaque
13820
13749
-
Trp
CCA
[ENA]
¢þ
>WENV181078846
OEAS01000725
[OEAS] human metagenome; G_DNA_Supragingival plaque
1271
1342
+
Trp
CCA
[ENA]
¢þ
>WENV181080030
OEAS01023950
[OEAS] human metagenome; G_DNA_Supragingival plaque
2091
2018
-
Trp
CCA
[ENA]
¢þ
>WENV181101232
OECM01023780
[OECM] human metagenome; G_DNA_Buccal mucosa
139
68
-
Trp
CCA
[ENA]
¢þ
>WENV181115004
OEEO01012838
[OEEO] human metagenome; G_DNA_Supragingival plaque
721
792
+
Trp
CCA
[ENA]
¢þ
>WENV181121691
OEFL01014751
[OEFL] human metagenome; G_DNA_Supragingival plaque
1296
1225
-
Trp
CCA
[ENA]
¢þ
>WENV181123559
OEFQ01000033
[OEFQ] human metagenome; G_DNA_Supragingival plaque
36997
37068
+
Trp
CCA
[ENA]
¢þ
>WENV181123733
OEFQ01000586
[OEFQ] human metagenome; G_DNA_Supragingival plaque
5671
5742
+
Trp
CCA
[ENA]
¢þ
>WENV181123886
OEFQ01002074
[OEFQ] human metagenome; G_DNA_Supragingival plaque
5678
5605
-
Trp
CCA
[ENA]
¢þ
>WENV181129754
OEFX01128083
[OEFX] human metagenome; G_DNA_Tongue dorsum
129
58
-
Trp
CCA
[ENA]
¢þ
>WENV181137174
OEGJ01000583
[OEGJ] human metagenome; G_DNA_Supragingival plaque
3652
3723
+
Trp
CCA
[ENA]
¢þ
>WENV181137563
OEGJ01006918
[OEGJ] human metagenome; G_DNA_Supragingival plaque
30
103
+
Trp
CCA
[ENA]
¢þ
>WENV181137648
OEGJ01011598
[OEGJ] human metagenome; G_DNA_Supragingival plaque
2070
1999
-
Trp
CCA
[ENA]
¢þ
>WENV181140734
OEGT01000094
[OEGT] human metagenome; G_DNA_Throat
15701
15630
-
Trp
CCA
[ENA]
¢þ
>WENV181146948
OEHQ01047200
[OEHQ] human metagenome; G_DNA_Supragingival plaque
72
1
-
Trp
CCA
[ENA]
¢þ
>WENV181177251
OEJS01000231
[OEJS] human metagenome; G_DNA_Supragingival plaque
9228
9299
+
Trp
CCA
[ENA]
¢þ
>WENV181177253
OEJS01000245
[OEJS] human metagenome; G_DNA_Supragingival plaque
771
844
+
Trp
CCA
[ENA]
¢þ
>WENV181182238
OEJV01004203
[OEJV] human metagenome; G_DNA_Supragingival plaque
1312
1383
+
Trp
CCA
[ENA]
¢þ
>WENV181182861
OEJV01058628
[OEJV] human metagenome; G_DNA_Supragingival plaque
571
500
-
Trp
CCA
[ENA]
¢þ
>WENV181183175
OEJV01237713
[OEJV] human metagenome; G_DNA_Supragingival plaque
6
77
+
Trp
CCA
[ENA]
¢þ
>W141143715
AWSR01000049
Bacteroidota
Capnocytophaga sp. oral taxon 863 oral taxon 863 str. F0517 [AWSR]
19904
19831
-
Trp
CCA
[ENA]
¡û
>W141200463
AYXY01000001
Bacteroidota
Zhouia amylolytica AD3 [AYXY]
348511
348584
+
Trp
CCA
[ENA]
¡û
>WENV183731172
PJTS01015103
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
715
644
-
Trp
CCA
[ENA]
¢þ
>WENV170980802
MWVT01001439
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
2582
2511
-
Trp
CCA
[ENA]
¢þ
>WENV170981041
MWVT01020052
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
948
1021
+
Trp
CCA
[ENA]
¢þ
>WENV170984833
MWVW01000520
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
1301
1374
+
Trp
CCA
[ENA]
¢þ
>WENV170984999
MWVW01008970
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
713
784
+
Trp
CCA
[ENA]
¢þ
>WENV170985715
MWVX01000944
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1341
1412
+
Trp
CCA
[ENA]
¢þ
>WENV170985845
MWVX01004317
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1137
1208
+
Trp
CCA
[ENA]
¢þ
>WENV170986164
MWVX01019043
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1718
1645
-
Trp
CCA
[ENA]
¢þ
>WENV170986165
MWVX01019118
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1862
1791
-
Trp
CCA
[ENA]
¢þ
>WENV170986765
MWVX01075629
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
807
734
-
Trp
CCA
[ENA]
¢þ
>WENV170986952
MWVX01101967
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
372
301
-
Trp
CCA
[ENA]
¢þ
>WENV170988281
MWVX01439573
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
124
53
-
Trp
CCA
[ENA]
¢þ
>WENV170988537
MWVX01526219
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
94
21
-
Trp
CCA
[ENA]
¢þ
>WENV170994278
MWWD01057328
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
16
87
+
Trp
CCA
[ENA]
¢þ
>WENV170994279
MWWD01057328
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
323
394
+
Trp
CCA
[ENA]
¢þ
>WENV170996887
MWWG01002580
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
2183
2112
-
Trp
CCA
[ENA]
¢þ
>WENV170996977
MWWG01012918
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
913
840
-
Trp
CCA
[ENA]
¢þ
>WENV170999201
MWWK01004477
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
1500
1573
+
Trp
CCA
[ENA]
¢þ
>WENV170999368
MWWK01035635
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
23
96
+
Trp
CCA
[ENA]
¢þ
>WENV170999516
MWWK01077085
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
245
174
-
Trp
CCA
[ENA]
¢þ
>C181063526
CP022379
Bacteroidota
Capnocytophaga sputigena D1179 [CP022379]
1938057
1938128
+
Trp
CCA
-
¡û
>C181063639
CP022381
Bacteroidota
Capnocytophaga sp. H2931 [CP022381]
634431
634360
-
Trp
CCA
-
¡û
>C181063705
CP022383
Bacteroidota
Capnocytophaga sputigena H4486 [CP022383]
2138543
2138614
+
Trp
CCA
-
¡û
>C181063792
CP022385
Bacteroidota
Capnocytophaga sputigena KC1668 [CP022385]
1917731
1917802
+
Trp
CCA
-
¡û
>C181063911
CP022387
Bacteroidota
Capnocytophaga stomatis H2177 [CP022387]
730405
730334
-
Trp
CCA
-
¡û
>C181148006
CP027229
Bacteroidota
Capnocytophaga sp. oral taxon 878 F0545 [CP027229]
2632171
2632100
-
Trp
CCA
-
¡û
>C181224964
LT906449
Bacteroidota
Capnocytophaga haemolytica NCTC12947 [LT906449]
1351871
1351798
-
Trp
CCA
-
¡û
>W1910927736
NIPO01000001
Bacteroidota
Avrilella dinanensis UR159 [NIPO]
123572
123501
-
Trp
CCA
[ENA]
¡û
>W1911239236
NSDI01000002
Bacteroidota
Capnocytophaga canis 17-158 [NSDI]
247198
247127
-
Trp
CCA
[ENA]
¡û
>W1810745608
QOWJ01000003
Bacteroidota
Paracnuella aquatica N24 [QOWJ]
300495
300570
+
Trp
CCA
[ENA]
¡û
>W1510076314
CDOH01000121
Bacteroidota
Capnocytophaga canis CcD95 [CDOH]
14729
14802
+
Trp
CCA
[ENA]
¡û
>C10103673
CP001632
Bacteroidota
Capnocytophaga ochracea DSM 7271 [CP001632]
1420634
1420705
+
Trp
CCA
[Ensembl]
¡û
>C161034879
CP011390
Bacteroidota
Flavisolibacter tropicus LCS9 [CP011390]
5211058
5211131
+
Trp
CCA
[Ensembl]
¡û
>C161059459
CP013690
Bacteroidota
Myroides odoratimimus PR63039 [CP013690]
1675671
1675600
-
Trp
CCA
[Ensembl]
¡û
>C161059480
CP013690
Bacteroidota
Myroides odoratimimus PR63039 [CP013690]
629509
629436
-
Trp
CCA
[Ensembl]
¡û
>C161068872
CP014227
Bacteroidota
Capnocytophaga haemolytica CCUG 32990 [CP014227]
512461
512534
+
Trp
CCA
[Ensembl]
¡û
>W121009155
AGED01000007
Bacteroidota
Myroides odoratimimus CCUG 12901 [AGED]
92310
92239
-
Trp
CCA
[ENA]
¡û
>W121009209
AGED01000050
Bacteroidota
Myroides odoratimimus CCUG 12901 [AGED]
46064
45991
-
Trp
CCA
[ENA]
¡û
>W121112710
ALNN01000044
Bacteroidota
Capnocytophaga sp. CM59 [ALNN]
1695
1768
+
Trp
CCA
[ENA]
¡û
>W121124095
BAEX01000001
Bacteroidota
Myroides injenensis M09-0166 [BAEX]
50662
50591
-
Trp
CCA
[ENA]
¡û
>W121124106
BAEX01000013
Bacteroidota
Myroides injenensis M09-0166 [BAEX]
21683
21756
+
Trp
CCA
[ENA]
¡û
>W1610061464
BCMQ01000001
Bacteroidota
Myroides odoratimimus [BCMQ]
184726
184797
+
Trp
CCA
[ENA]
¡û
>W1610061522
BCMQ01000017
Bacteroidota
Myroides odoratimimus [BCMQ]
1460
1533
+
Trp
CCA
[ENA]
¡û
>W1610535112
JRLX01000030
Bacteroidota
Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]
44187
44114
-
Trp
CCA
[ENA]
¡û
>W1610888513
LROZ01000001
Bacteroidota
Myroides odoratus [LROZ]
413309
413382
+
Trp
CCA
[ENA]
¡û
>W1610888541
LROZ01000006
Bacteroidota
Myroides odoratus [LROZ]
153547
153620
+
Trp
CCA
[ENA]
¡û
>W1710059129
BCMQ01000001
Bacteroidota
Myroides odoratimimus [BCMQ]
184726
184797
+
Trp
CCA
[ENA]
¡û
>W1710059187
BCMQ01000017
Bacteroidota
Myroides odoratimimus [BCMQ]
1460
1533
+
Trp
CCA
[ENA]
¡û
>W1710528360
FNND01000005
Bacteroidota
Capnocytophaga granulosa [FNND]
150871
150944
+
Trp
CCA
[ENA]
¡û
>W1710551245
FOFY01000001
Bacteroidota
Myroides profundi [FOFY]
55675
55746
+
Trp
CCA
[ENA]
¡û
>W1710551270
FOFY01000004
Bacteroidota
Myroides profundi [FOFY]
151180
151253
+
Trp
CCA
[ENA]
¡û
>W1710574105
FOYA01000002
Bacteroidota
Flavobacterium akiainvivens [FOYA]
397229
397300
+
Trp
CCA
[ENA]
¡û
>W1710578239
FPBK01000010
Bacteroidota
Pustulibacterium marinum [FPBK]
152620
152693
+
Trp
CCA
[ENA]
¡û
>W1710583144
FQUO01000006
Bacteroidota
Cnuella takakiae [FQUO]
51138
51065
-
Trp
CCA
[ENA]
¡û
>W1710591224
FRBO01000008
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
168016
168087
+
Trp
CCA
[ENA]
¡û
>W1710591260
FRBO01000019
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
27139
27066
-
Trp
CCA
[ENA]
¡û
>W1710637348
JRLX01000030
Bacteroidota
Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]
44187
44114
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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