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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49924 (108 seq.)
>C171131381
LT827128
Actinomycetota
Gordonibacter massiliensis [LT827128]
2701017
2700930
-
Ser
TGA
-
¡û
>WENV180141582
OATU01029399
[OATU] human gut metagenome; faeces
302
389
+
Ser
TGA
[ENA]
¡û
>WENV180153075
OAUR01000498
[OAUR] human gut metagenome; faeces
3797
3884
+
Ser
TGA
[ENA]
¡û
>WENV180169192
OAVS01001610
[OAVS] human gut metagenome; faeces
3827
3914
+
Ser
TGA
[ENA]
¡û
>WENV180171091
OAVV01028123
[OAVV] human gut metagenome; faeces
409
496
+
Ser
TGA
[ENA]
¡û
>WENV180177978
OAWF01007399
[OAWF] human gut metagenome; faeces
577
664
+
Ser
TGA
[ENA]
¡û
>WENV180191134
OAXB01000845
[OAXB] human gut metagenome; faeces
2761
2674
-
Ser
TGA
[ENA]
¡û
>WENV180193835
OAZW01019187
[OAZW] human gut metagenome; faeces
120
33
-
Ser
TGA
[ENA]
¡û
>WENV180410622
OBUX01000557
[OBUX] human gut metagenome; faeces
10137
10224
+
Ser
TGA
[ENA]
¡û
>WENV180420526
OBVO01006222
[OBVO] human gut metagenome; faeces
462
375
-
Ser
TGA
[ENA]
¡û
>WENV180440896
OBWV01005151
[OBWV] human gut metagenome; faeces
96
9
-
Ser
TGA
[ENA]
¡û
>WENV180446837
OBXC01001712
[OBXC] human gut metagenome; faeces
9948
10035
+
Ser
TGA
[ENA]
¡û
>WENV180487079
OBZN01010834
[OBZN] human gut metagenome; faeces
302
389
+
Ser
TGA
[ENA]
¡û
>WENV180506663
OCAS01002467
[OCAS] human gut metagenome; faeces
341
254
-
Ser
TGA
[ENA]
¡û
>WENV180596860
OCPI01017613
[OCPI] human gut metagenome; faeces
101
14
-
Ser
TGA
[ENA]
¡û
>WENV181329010
OFLV01002845
[OFLV] metagenome; faeces
577
490
-
Ser
TGA
[ENA]
¡û
>WENV181343734
OFMJ01008516
[OFMJ] human gut metagenome; human gut
3069
3156
+
Ser
TGA
[ENA]
¡û
>WENV181344673
OFMK01002157
[OFMK] human gut metagenome; human gut
106
19
-
Ser
TGA
[ENA]
¡û
>WENV181360464
OFMX01019979
[OFMX] human gut metagenome; human gut
1405
1318
-
Ser
TGA
[ENA]
¡û
>WENV181427246
OGCQ01049988
[OGCQ] human gut metagenome; human gut
75
162
+
Ser
TGA
[ENA]
¡û
>WENV181509145
OGGQ01002925
[OGGQ] metagenome; Human gut stool
6845
6758
-
Ser
TGA
[ENA]
¡û
>WENV181733594
OGQE01005127
[OGQE] human gut metagenome; faeces
504
417
-
Ser
TGA
[ENA]
¡û
>WENV181801015
OGRZ01003216
[OGRZ] human gut metagenome; fecal sample 1 from infant 2
704
617
-
Ser
TGA
[ENA]
¡û
>WENV181802067
OGSC01002241
[OGSC] human gut metagenome; fecal sample 8 from infant 5
938
851
-
Ser
TGA
[ENA]
¡û
>WENV181804229
OGSE01006544
[OGSE] human gut metagenome; fecal sample 3 from infant 2
102
189
+
Ser
TGA
[ENA]
¡û
>WENV181818393
OGTS01000653
[OGTS] human gut metagenome; fecal sample 4 from infant 4
1451
1538
+
Ser
TGA
[ENA]
¡û
>WENV181879994
OGXF01005573
[OGXF] human gut metagenome; faeces
122
35
-
Ser
TGA
[ENA]
¡û
>WENV181889693
OGXN01000819
[OGXN] human gut metagenome; faeces
15279
15192
-
Ser
TGA
[ENA]
¡û
>WENV181917028
OGYG01001612
[OGYG] human gut metagenome; faeces
3676
3589
-
Ser
TGA
[ENA]
¡û
>WENV181918531
OGYH01005446
[OGYH] human gut metagenome; faeces
5094
5007
-
Ser
TGA
[ENA]
¡û
>WENV181967592
OGZV01009883
[OGZV] human gut metagenome; faeces
3057
3144
+
Ser
TGA
[ENA]
¡û
>WENV182818793
OJZY01001521
[OJZY] human gut metagenome; human gut
1090
1003
-
Ser
TGA
[ENA]
¡û
>WENV182881738
OKSA01032804
[OKSA] human gut metagenome; faeces
1325
1412
+
Ser
TGA
[ENA]
¡û
>WENV182960909
OKWK01000048
[OKWK] human gut metagenome; stool
84553
84640
+
Ser
TGA
[ENA]
¡û
>WENV183032058
OLFX01045885
[OLFX] human gut metagenome; faeces
479
566
+
Ser
TGA
[ENA]
¡û
>WENV183047135
OLGF01002386
[OLGF] human gut metagenome; faeces
100
13
-
Ser
TGA
[ENA]
¡û
>WENV183135921
OLOE01028112
[OLOE] human gut metagenome; faeces
175
88
-
Ser
TGA
[ENA]
¡û
>WENV183136154
OLOF01000129
[OLOF] human gut metagenome; faeces
10820
10733
-
Ser
TGA
[ENA]
¡û
>WENV183137111
OLOG01001160
[OLOG] human gut metagenome; faeces
10863
10950
+
Ser
TGA
[ENA]
¡û
>WENV183140961
OLOJ01000531
[OLOJ] human gut metagenome; faeces
19132
19045
-
Ser
TGA
[ENA]
¡û
>WENV183170896
OLPB01002377
[OLPB] human gut metagenome; faeces
3863
3950
+
Ser
TGA
[ENA]
¡û
>WENV183173637
OLPD01027263
[OLPD] human gut metagenome; faeces
825
912
+
Ser
TGA
[ENA]
¡û
>WENV183188663
OLPP01009749
[OLPP] human gut metagenome; faeces
98
11
-
Ser
TGA
[ENA]
¡û
>WENV183202370
OLPX01002566
[OLPX] human gut metagenome; faeces
10395
10482
+
Ser
TGA
[ENA]
¡û
>WENV183214289
OLQE01004589
[OLQE] human gut metagenome; faeces
3781
3868
+
Ser
TGA
[ENA]
¡û
>WENV183217633
OLQI01001040
[OLQI] human gut metagenome; faeces
20183
20270
+
Ser
TGA
[ENA]
¡û
>WENV183224665
OLQN01007097
[OLQN] human gut metagenome; faeces
1711
1624
-
Ser
TGA
[ENA]
¡û
>WENV183228979
OLQR01023883
[OLQR] human gut metagenome; faeces
296
383
+
Ser
TGA
[ENA]
¡û
>WENV183236610
OLQX01007923
[OLQX] human gut metagenome; faeces
100
13
-
Ser
TGA
[ENA]
¡û
>WENV183260288
OLRP01000192
[OLRP] human gut metagenome; faeces
10678
10591
-
Ser
TGA
[ENA]
¡û
>WENV183285798
OLSE01001109
[OLSE] human gut metagenome; faeces
20162
20249
+
Ser
TGA
[ENA]
¡û
>WENV183295858
OLSL01004626
[OLSL] human gut metagenome; faeces
4781
4694
-
Ser
TGA
[ENA]
¡û
>WENV183297775
OLSM01009318
[OLSM] human gut metagenome; faeces
154
67
-
Ser
TGA
[ENA]
¡û
>WENV183301073
OLSO01009667
[OLSO] human gut metagenome; faeces
1033
1120
+
Ser
TGA
[ENA]
¡û
>WENV183302651
OLSP01071275
[OLSP] human gut metagenome; faeces
96
9
-
Ser
TGA
[ENA]
¡û
>WENV170544111
CXRE01000569
[CXRE] human gut metagenome genome assembly hE3, contig hE3_contig002263.; ENVO:feces
441
528
+
Ser
TGA
[ENA]
¡û
>W09108979
ABTT01000001
Actinomycetota
Eggerthella lenta DSM 2243 [ABTT]
108497
108410
-
Ser
TGA
[ENA]
¡û
>W1911680180
QICC01000002
Actinomycetota
Eggerthella sinensis DSM 16107 [QICC]
38517
38604
+
Ser
TGA
[ENA]
¡û
>W1810240872
PPTT01000003
Actinomycetota
Eggerthella sinensis DSM 16107 [PPTT]
65222
65309
+
Ser
TGA
[ENA]
¡û
>W1810241051
PPTW01000021
Actinomycetota
Eggerthella lenta RC4/6F [PPTW]
38958
39045
+
Ser
TGA
[ENA]
¡û
>W1810241098
PPTX01000024
Actinomycetota
Eggerthella lenta MR1 #12 [PPTX]
6916
6829
-
Ser
TGA
[ENA]
¡û
>W1810241136
PPTY01000012
Actinomycetota
Eggerthella lenta FAA1-1-60AUCSF [PPTY]
35845
35758
-
Ser
TGA
[ENA]
¡û
>W1810241517
PPUG01000015
Actinomycetota
Eggerthella lenta CC7/5 D5 2 [PPUG]
10248
10335
+
Ser
TGA
[ENA]
¡û
>W1810241569
PPUH01000027
Actinomycetota
Eggerthella lenta ATCC 25559 [PPUH]
39890
39803
-
Ser
TGA
[ENA]
¡û
>W1810241668
PPUJ01000034
Actinomycetota
Eggerthella lenta AB8 #2 [PPUJ]
10245
10332
+
Ser
TGA
[ENA]
¡û
>W1810241706
PPUK01000022
Actinomycetota
Eggerthella lenta AB12 #2 [PPUK]
19271
19184
-
Ser
TGA
[ENA]
¡û
>W1810241723
PPUL01000001
Actinomycetota
Eggerthella lenta A2 [PPUL]
178406
178319
-
Ser
TGA
[ENA]
¡û
>W1810241788
PPUM01000011
Actinomycetota
Eggerthella lenta 32-6-I 6 NA [PPUM]
18535
18448
-
Ser
TGA
[ENA]
¡û
>W1810241951
PPUP01000027
Actinomycetota
Eggerthella lenta 19C [PPUP]
10245
10332
+
Ser
TGA
[ENA]
¡û
>W2010214083
CABHNG010000004
Actinomycetota
Eggerthella lenta [CABHNG]
85520
85607
+
Ser
TGA
[ENA]
¡û
>W2010285585
CABMLF010000016
Actinomycetota
Eggerthellaceae bacterium [CABMLF]
76951
76864
-
Ser
TGA
[ENA]
¡û
>W2010418403
FXXA01000002
Actinomycetota
Eggerthella timonensis Marseille-P3135 [FXXA]
644092
644005
-
Ser
TGA
[ENA]
¡û
>W2010752403
JACMSE010000001
Actinomycetota
Gordonibacter massiliensis N22 [JACMSE]
389983
389896
-
Ser
TGA
[ENA]
¡û
>W2011257730
QICC01000002
Actinomycetota
Eggerthella sinensis DSM 16107 [QICC]
38517
38604
+
Ser
TGA
[ENA]
¡û
>W2012011037
VEVP01000045
Actinomycetota
Eggerthella lenta SECO-MT75m2 [VEVP]
2363
2276
-
Ser
TGA
[ENA]
¡û
>W2012139625
VTFY01000002
Actinomycetota
Eggerthella sp. HF-4214 [VTFY]
459327
459240
-
Ser
TGA
[ENA]
¡û
>W2012287107
WDPV01000055
Actinomycetota
Bifidobacterium longum BIOML-A18 [WDPV]
3096
3009
-
Ser
TGA
[ENA]
¡û
>W2012412674
WPOH01000029
Actinomycetota
Eggerthella lenta MRI-F 40 [WPOH]
20776
20863
+
Ser
TGA
[ENA]
¡û
>W2012412811
WPOK01000044
Actinomycetota
Eggerthella lenta ResAG-145 [WPOK]
20787
20874
+
Ser
TGA
[ENA]
¡û
>W2012481847
WWRW01000022
Actinomycetota
Eggerthella sp. BIOML-A5 [WWRW]
18047
18134
+
Ser
TGA
[ENA]
¡û
>W2110243817
JACOOA010000004
Actinomycetota
Eggerthella sp. NSJ-70 [JACOOA]
80823
80910
+
Ser
TGA
[ENA]
¡û
>W2110338981
JADMOT010000003
Actinomycetota
Eggerthella lenta BSD2780120875_150330_C12 [JADMOT]
527638
527551
-
Ser
TGA
[ENA]
¡û
>W2110343140
JADMUV010000009
Actinomycetota
Eggerthella lenta 1001095IJ_161003_H5 [JADMUV]
6866
6779
-
Ser
TGA
[ENA]
¡û
>W2110346000
JADMYQ010000052
Actinomycetota
Eggerthella lenta 1001713B170221_170320_D6 [JADMYQ]
8665
8752
+
Ser
TGA
[ENA]
¡û
>W2110348680
JADNCP010000012
Actinomycetota
Eggerthella lenta 1001287H_170206_A6 [JADNCP]
6865
6778
-
Ser
TGA
[ENA]
¡û
>W2110350142
JADNER010000019
Actinomycetota
Eggerthella lenta 1001095H_141210_C9 [JADNER]
17591
17504
-
Ser
TGA
[ENA]
¡û
>W2110352988
JADNIO010000016
Actinomycetota
Eggerthella lenta 1001302B_160321_A1 [JADNIO]
50890
50977
+
Ser
TGA
[ENA]
¡û
>W2110354051
JADNJW010000009
Actinomycetota
Eggerthella lenta D33t1_170424_F11 [JADNJW]
6865
6778
-
Ser
TGA
[ENA]
¡û
>W2110356738
JADNNT010000024
Actinomycetota
Eggerthella lenta 1001136B_160425_H2 [JADNNT]
6866
6779
-
Ser
TGA
[ENA]
¡û
>W2110356923
JADNOB010000006
Actinomycetota
Eggerthella lenta D33t1_170424_B8 [JADNOB]
98572
98485
-
Ser
TGA
[ENA]
¡û
>W2110364347
JADOZP010000010
Actinomycetota
Eggerthella lenta J1100102_180507_G10 [JADOZP]
6865
6778
-
Ser
TGA
[ENA]
¡û
>W2110366970
JADPDY010000010
Actinomycetota
Eggerthella lenta J1101653_170612_H2 [JADPDY]
86196
86283
+
Ser
TGA
[ENA]
¡û
>W2110634003
JAHOLL010000027
Actinomycetota
Eggerthella lenta MSK.15.90 [JAHOLL]
6844
6757
-
Ser
TGA
[ENA]
¡û
>W2110634278
JAHOLW010000027
Actinomycetota
Eggerthella lenta MSK.15.123 [JAHOLW]
6843
6756
-
Ser
TGA
[ENA]
¡û
>W2110634325
JAHOLX010000027
Actinomycetota
Eggerthella lenta MSK.15.110 [JAHOLX]
6843
6756
-
Ser
TGA
[ENA]
¡û
>W2110634418
JAHOMA010000027
Actinomycetota
Eggerthella lenta MSK.14.3 [JAHOMA]
6844
6757
-
Ser
TGA
[ENA]
¡û
>W2110638889
JAHQVG010000028
Actinomycetota
Eggerthella lenta MSK.15.5 [JAHQVG]
6845
6758
-
Ser
TGA
[ENA]
¡û
>C211174954
CP063310
Actinomycetota
Eggerthella sp. HF-1101 [CP063310]
101958
101871
-
Ser
TGA
-
¡û
>W2110725230
JAJCGZ010000025
Actinomycetota
Eggerthella lenta SL.3.13 [JAJCGZ]
10326
10413
+
Ser
TGA
[ENA]
¡û
>W2110725341
JAJCHC010000001
Actinomycetota
Eggerthella sinensis DFI.5.73 [JAJCHC]
696879
696966
+
Ser
TGA
[ENA]
¡û
>W2110727488
JAJCJT010000014
Actinomycetota
Eggerthella lenta DFI.7.11 [JAJCJT]
10173
10260
+
Ser
TGA
[ENA]
¡û
>W2110730573
JAJCNN010000017
Actinomycetota
Eggerthella lenta DFI.2.80 [JAJCNN]
449
362
-
Ser
TGA
[ENA]
¡û
>C231016482
AP025575
Actinomycetota
Eggerthella lenta CE91-St33 [AP025575]
102166
102079
-
Ser
TGA
-
¡û
>C231260968
CP089331
Actinomycetota
Eggerthella lenta APC055-529-1D [CP089331]
100701
100614
-
Ser
TGA
-
¡û
>C231260995
CP089333
Actinomycetota
Eggerthella lenta APC055-539-5C [CP089333]
3375127
3375214
+
Ser
TGA
-
¡û
>C231261203
CP089337
Actinomycetota
Eggerthella lenta APC055-943-4 [CP089337]
94813
94726
-
Ser
TGA
-
¡û
>C10106497
CP001726
Actinomycetota
Eggerthella lenta DSM 2243 [CP001726]
114601
114514
-
Ser
TGA
[Ensembl]
¡û
>W1610002071
ADLX01000030
Actinomycetota
Eggerthella lenta 1_1_60AFAA [ADLX]
81941
82028
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK