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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50023 (13 seq.)
>WENV170421073
CEUN01045782
[CEUN] marine metagenome genome assembly TARA_124_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
8142
8229
+
Ser
GGA
[ENA]
¡û
>WENV170426297
CEUQ01071072
[CEUQ] marine metagenome genome assembly TARA_124_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
517
430
-
Ser
GGA
[ENA]
¡û
>WENV170465416
CEVD01509159
[CEVD] marine metagenome genome assembly TARA_123_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1091
1178
+
Ser
GGA
[ENA]
¡û
>WENV170962609
MRWF01021825
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
14153
14066
-
Ser
GGA
[ENA]
¡û
>WENV170963403
MRWG01000160
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
109100
109013
-
Ser
GGA
[ENA]
¡û
>W1810110863
PHIG01000043
Alphaproteobacteria
Minwuia thermotolerans SY3-13 [PHIG]
96017
95930
-
Ser
GGA
[ENA]
¡û
>W1810138078
PIGG01000076
Alphaproteobacteria
Minwuia thermotolerans SY3-15 [PIGG]
96017
95930
-
Ser
GGA
[ENA]
¡û
>C211031021
CP018227
Alphaproteobacteria
Kordiimonadales bacterium IMCC3096 [CP018227]
2114661
2114574
-
Ser
GGA
-
¡û
>C241250153
CP123781
Alphaproteobacteria
Minwuia sp. IMCC3009 [CP123781]
4177586
4177499
-
Ser
GGA
-
¡û
>C241250200
CP123782
Alphaproteobacteria
Minwuia sp. IMCC3060 [CP123782]
4194981
4194894
-
Ser
GGA
-
¡û
>C241250232
CP123783
Alphaproteobacteria
Minwuia sp. IMCC3077 [CP123783]
1155888
1155975
+
Ser
GGA
-
¡û
>C241250319
CP123784
Alphaproteobacteria
Minwuia sp. IMCC4030 [CP123784]
895303
895216
-
Ser
GGA
-
¡û
>C161094040
CP016093
Alphaproteobacteria
Rhizobiales bacterium NRL2 [CP016093]
4549177
4549264
+
Ser
GGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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