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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50053 (41 seq.)
>W131090000
AOFE01000070
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
235444
235358
-
Ser
CGA
[ENA]
¡û
>W1711081245
LSSA01000321
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
26825
26911
+
Ser
CGA
[ENA]
¡û
>W1711711339
MTAV01000121
Cyanobacteriota
Nostoc sp. T09 [MTAV]
109246
109160
-
Ser
CGA
[ENA]
¡û
>W1711711399
MTAW01000178
Cyanobacteriota
Nostoc sp. 106C [MTAW]
377
291
-
Ser
CGA
[ENA]
¡û
>PL171000154
AP018223
Cyanobacteria
Nostoc linckia NIES-25 plasmid:plasmid1
1195933
1196019
+
Ser
CGA
[ENA]
¡û
>w021706
AAVW01000077
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
21524
21613
+
Ser
CGA
[ENA]
¡û
>w002300
AAAY02000125
Cyanobacteriota
Nostoc punctiforme [AAAY]
2219
2308
+
Ser
CGA
[ENA]
¡û
>WENV181841047
OGVQ01000022
[OGVQ] freshwater metagenome; freshwater
2505
2591
+
Ser
CGA
[ENA]
¢þ
>WENV171003114
NNBT01001392
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
17
103
+
Ser
CGA
[ENA]
¢þ
>WENV171003373
NNBT01007676
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
213
127
-
Ser
CGA
[ENA]
¢þ
>WENV171003406
NNBT01009888
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
281
195
-
Ser
CGA
[ENA]
¢þ
>WENV171003433
NNBU01000019
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
31330
31416
+
Ser
CGA
[ENA]
¢þ
>WENV171003676
NNBV01000034
[NNBV] plant metagenome; symbiotic tissue sample KVS11
5511
5425
-
Ser
CGA
[ENA]
¢þ
>C181004744
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
1048188
1048274
+
Ser
CGA
-
¡û
>C181043629
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
5145692
5145606
-
Ser
CGA
-
¡û
>C181105262
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
3055522
3055436
-
Ser
CGA
-
¡û
>C181137750
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4984815
4984729
-
Ser
CGA
-
¡û
>C181137822
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
5666913
5666827
-
Ser
CGA
-
¡û
>C191083061
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
4717009
4716923
-
Ser
CGA
-
¡û
>W1910020529
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
4932027
4931941
-
Ser
CGA
[ENA]
¡û
>W1910596215
LAGX01000047
Cyanobacteriota
Nostoc linckia z1 [LAGX]
28823
28909
+
Ser
CGA
[ENA]
¡û
>W1910596280
LAGY01000046
Cyanobacteriota
Nostoc linckia z2 [LAGY]
28751
28837
+
Ser
CGA
[ENA]
¡û
>W1910596370
LAGZ01000026
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
117998
118084
+
Ser
CGA
[ENA]
¡û
>W1910596455
LAHA01000023
Cyanobacteriota
Nostoc linckia z4 [LAHA]
131832
131918
+
Ser
CGA
[ENA]
¡û
>W1910596508
LAHB01000011
Cyanobacteriota
Nostoc linckia z6 [LAHB]
149804
149890
+
Ser
CGA
[ENA]
¡û
>W1910596615
LAHC01000037
Cyanobacteriota
Nostoc linckia z7 [LAHC]
28823
28909
+
Ser
CGA
[ENA]
¡û
>W1910596664
LAHD01000011
Cyanobacteriota
Nostoc linckia z8 [LAHD]
60696
60782
+
Ser
CGA
[ENA]
¡û
>W1910596753
LAHE01000020
Cyanobacteriota
Nostoc linckia z9 [LAHE]
35377
35463
+
Ser
CGA
[ENA]
¡û
>W1910596862
LAHF01000028
Cyanobacteriota
Nostoc linckia z13 [LAHF]
24235
24321
+
Ser
CGA
[ENA]
¡û
>W1910596923
LAHG01000020
Cyanobacteriota
Nostoc linckia z14 [LAHG]
35411
35497
+
Ser
CGA
[ENA]
¡û
>W1910597000
LAHH01000014
Cyanobacteriota
Nostoc linckia z15 [LAHH]
44721
44807
+
Ser
CGA
[ENA]
¡û
>W1910597088
LAHI01000009
Cyanobacteriota
Nostoc linckia z16 [LAHI]
100394
100480
+
Ser
CGA
[ENA]
¡û
>W1910597184
LAHJ01000021
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
92063
92149
+
Ser
CGA
[ENA]
¡û
>W1910646645
LWSY01000057
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
43863
43777
-
Ser
CGA
[ENA]
¡û
>W1910792638
MRBZ01000003
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
80239
80153
-
Ser
CGA
[ENA]
¡û
>W1911118756
NOLJ01000007
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
465463
465377
-
Ser
CGA
[ENA]
¡û
>W1911118820
NOLK01000069
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
14965
15051
+
Ser
CGA
[ENA]
¡û
>W1911244254
NSHF01000017
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
2878
2964
+
Ser
CGA
[ENA]
¡û
>W1911581765
PGEM01000015
Cyanobacteriota
Cuspidothrix issatschenkoi CHARLIE-1 [PGEM]
39933
39847
-
Ser
CGA
[ENA]
¡û
>C161005346
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
4313956
4313870
-
Ser
CGA
[Ensembl]
¡û
>W1710087984
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
5383931
5383845
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK