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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50136 (84 seq.)
>W1711513292
MLFP01000005
Gammaproteobacteria
Pantoea rodasii [MLFP]
161667
161754
+
Ser
TGA
[ENA]
¡û
>W1711513387
MLFR01000010
Gammaproteobacteria
Pantoea rwandensis [MLFR]
22110
22023
-
Ser
TGA
[ENA]
¡û
>W1711513388
MLFR01000010
Gammaproteobacteria
Pantoea rwandensis [MLFR]
21987
21900
-
Ser
TGA
[ENA]
¡û
>W1711513428
MLFS01000003
Gammaproteobacteria
Pantoea wallisii [MLFS]
64180
64093
-
Ser
TGA
[ENA]
¡û
>WENV180310392
OBJT01000394
[OBJT] soil metagenome; soil
118
31
-
Ser
TGA
[ENA]
¡û
>WENV170000330
AEWW01013356
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
59070
58983
-
Ser
TGA
[ENA]
¡û
>C191175003
CP040095
Gammaproteobacteria
Pantoea sp. SO10 [CP040095]
1550518
1550605
+
Ser
TGA
-
¡û
>W1911492804
OBEC01000012
Gammaproteobacteria
Pantoea sp. GL120224-02 [OBEC]
2347
2260
-
Ser
TGA
[ENA]
¡û
>W1911496883
OCMY01000001
Gammaproteobacteria
Enterobacteriaceae bacterium JKS000234 [OCMY]
342468
342381
-
Ser
TGA
[ENA]
¡û
>W1911496884
OCMY01000001
Gammaproteobacteria
Enterobacteriaceae bacterium JKS000234 [OCMY]
342343
342256
-
Ser
TGA
[ENA]
¡û
>W1810071439
PEES01000001
Gammaproteobacteria
Enterobacteriaceae bacterium JKS000233 [PEES]
2081796
2081709
-
Ser
TGA
[ENA]
¡û
>W1810071440
PEES01000001
Gammaproteobacteria
Enterobacteriaceae bacterium JKS000233 [PEES]
2081671
2081584
-
Ser
TGA
[ENA]
¡û
>W1810147251
PIQI01000023
Gammaproteobacteria
Pantoea rodasii DSM 26611 [PIQI]
616682
616769
+
Ser
TGA
[ENA]
¡û
>W1810177723
PJRT01000002
Gammaproteobacteria
Pantoea endophytica 596 [PJRT]
220153
220066
-
Ser
TGA
[ENA]
¡û
>W1810676931
QKMJ01000001
Gammaproteobacteria
Pantoea sp. AG1095 [QKMJ]
420648
420735
+
Ser
TGA
[ENA]
¡û
>C151051577
CP009454
Gammaproteobacteria
Pantoea rwandensis ND04 [CP009454]
3239935
3239848
-
Ser
TGA
[Ensembl]
¡û
>C151051578
CP009454
Gammaproteobacteria
Pantoea rwandensis ND04 [CP009454]
3239812
3239725
-
Ser
TGA
[Ensembl]
¡û
>W2010654432
JACAPA010000009
Gammaproteobacteria
Pantoea sp. B9002 [JACAPA]
56650
56563
-
Ser
TGA
[ENA]
¡û
>W2010654433
JACAPA010000009
Gammaproteobacteria
Pantoea sp. B9002 [JACAPA]
56526
56439
-
Ser
TGA
[ENA]
¡û
>W2010660304
JACAWY010000001
Gammaproteobacteria
Pantoea sp. BIGb0393 [JACAWY]
3671440
3671527
+
Ser
TGA
[ENA]
¡û
>W2010667714
JACBYY010000002
Gammaproteobacteria
Enterobacter sp. Sphag71 [JACBYY]
492460
492373
-
Ser
TGA
[ENA]
¡û
>W2010718911
JACHZD010000002
Gammaproteobacteria
Enterobacter sp. Sphag1F [JACHZD]
492460
492373
-
Ser
TGA
[ENA]
¡û
>W2011153755
OBEC01000012
Gammaproteobacteria
Pantoea sp. GL120224-02 [OBEC]
2347
2260
-
Ser
TGA
[ENA]
¡û
>W2011157787
OCMY01000001
Gammaproteobacteria
Enterobacteriaceae bacterium JKS000234 [OCMY]
342468
342381
-
Ser
TGA
[ENA]
¡û
>W2011157788
OCMY01000001
Gammaproteobacteria
Enterobacteriaceae bacterium JKS000234 [OCMY]
342343
342256
-
Ser
TGA
[ENA]
¡û
>W2011756714
SZZV01000001
Gammaproteobacteria
Pantoea sp. Seng [SZZV]
161842
161929
+
Ser
TGA
[ENA]
¡û
>W2011756952
SZZZ01000015
Gammaproteobacteria
Pantoea sp. Taur [SZZZ]
125059
125146
+
Ser
TGA
[ENA]
¡û
>W2012203958
VWXC01000001
Gammaproteobacteria
Pantoea sp. Al-1710 [VWXC]
751335
751248
-
Ser
TGA
[ENA]
¡û
>W2012204044
VWXD01000002
Gammaproteobacteria
Pantoea sp. Acro-805 [VWXD]
221025
220938
-
Ser
TGA
[ENA]
¡û
>W2012204198
VWXF01000001
Gammaproteobacteria
Pantoea sp. Acro-835 [VWXF]
693582
693495
-
Ser
TGA
[ENA]
¡û
>W2012204199
VWXF01000001
Gammaproteobacteria
Pantoea sp. Acro-835 [VWXF]
693453
693366
-
Ser
TGA
[ENA]
¡û
>W2012204200
VWXF01000001
Gammaproteobacteria
Pantoea sp. Acro-835 [VWXF]
693317
693230
-
Ser
TGA
[ENA]
¡û
>W2012356287
WJYG01000001
Gammaproteobacteria
Enterobacteriaceae bacterium RIT702 [WJYG]
462574
462487
-
Ser
TGA
[ENA]
¡û
>W2012356410
WJYI01000001
Gammaproteobacteria
Enterobacteriaceae bacterium RIT697 [WJYI]
490605
490692
+
Ser
TGA
[ENA]
¡û
>W2012356629
WJYL01000003
Gammaproteobacteria
Enterobacteriaceae bacterium RIT692 [WJYL]
614503
614590
+
Ser
TGA
[ENA]
¡û
>W2110095580
CAJCKS010000036
Gammaproteobacteria
Pantoea sp. ME81 [CAJCKS]
3134
3047
-
Ser
TGA
[ENA]
¡û
>W2110268617
JACVBQ010000005
Gammaproteobacteria
Pantoea sp. PNT02 [JACVBQ]
314740
314653
-
Ser
TGA
[ENA]
¡û
>W2110268710
JACVBT010000001
Gammaproteobacteria
Pantoea sp. PNT03 [JACVBT]
1610178
1610091
-
Ser
TGA
[ENA]
¡û
>W2110268711
JACVBT010000001
Gammaproteobacteria
Pantoea sp. PNT03 [JACVBT]
1610054
1609967
-
Ser
TGA
[ENA]
¡û
>W2110275210
JACVUN010000003
Gammaproteobacteria
Erwinia sp. S59 [JACVUN]
163383
163470
+
Ser
TGA
[ENA]
¡û
>W2110275278
JACVUO010000009
Gammaproteobacteria
Pantoea sp. S61 [JACVUO]
64671
64584
-
Ser
TGA
[ENA]
¡û
>W2110441310
JAERJK010000003
Gammaproteobacteria
Pantoea dispersa JGM106 [JAERJK]
183717
183804
+
Ser
TGA
[ENA]
¡û
>W2110441358
JAERJL010000004
Gammaproteobacteria
Pantoea dispersa JGM112 [JAERJL]
32550
32463
-
Ser
TGA
[ENA]
¡û
>W2110441374
JAERJM010000001
Gammaproteobacteria
Pantoea sp. JGM49 [JAERJM]
28978
29065
+
Ser
TGA
[ENA]
¡û
>W2110513765
JAFLWX010000002
Gammaproteobacteria
Pantoea endophytica HN-23 [JAFLWX]
218017
217930
-
Ser
TGA
[ENA]
¡û
>W2110580852
JAGXKB010000001
Gammaproteobacteria
Pantoea sp. GbtcB22 [JAGXKB]
1041619
1041532
-
Ser
TGA
[ENA]
¡û
>W2110580853
JAGXKB010000001
Gammaproteobacteria
Pantoea sp. GbtcB22 [JAGXKB]
1041495
1041408
-
Ser
TGA
[ENA]
¡û
>W2110593380
JAHCSX010000001
Gammaproteobacteria
Pantoea sp. B270 [JAHCSX]
602561
602648
+
Ser
TGA
[ENA]
¡û
>W2110685873
JAIMIE010000001
Gammaproteobacteria
Pantoea sp. DY-5 [JAIMIE]
1087484
1087397
-
Ser
TGA
[ENA]
¡û
>W2110685933
JAIMIF010000001
Gammaproteobacteria
Pantoea sp. DY-15 [JAIMIF]
632388
632475
+
Ser
TGA
[ENA]
¡û
>W2110686002
JAIMIG010000001
Gammaproteobacteria
Pantoea sp. DY-17 [JAIMIG]
623292
623379
+
Ser
TGA
[ENA]
¡û
>W2110686003
JAIMIG010000001
Gammaproteobacteria
Pantoea sp. DY-17 [JAIMIG]
623416
623503
+
Ser
TGA
[ENA]
¡û
>W2110696283
JAIUDA010000001
Gammaproteobacteria
Pantoea rwandensis alder81 [JAIUDA]
392239
392326
+
Ser
TGA
[ENA]
¡û
>W2110696284
JAIUDA010000001
Gammaproteobacteria
Pantoea rwandensis alder81 [JAIUDA]
392362
392449
+
Ser
TGA
[ENA]
¡û
>W2110696375
JAIUDE010000011
Gammaproteobacteria
Pantoea rwandensis alder70 [JAIUDE]
44683
44596
-
Ser
TGA
[ENA]
¡û
>W2110696376
JAIUDE010000011
Gammaproteobacteria
Pantoea rwandensis alder70 [JAIUDE]
44560
44473
-
Ser
TGA
[ENA]
¡û
>W2110696434
JAIUDF010000001
Gammaproteobacteria
Pantoea rwandensis alder69 [JAIUDF]
643097
643010
-
Ser
TGA
[ENA]
¡û
>C231456311
CP102604
Gammaproteobacteria
Pantoea sp. SOD02 [CP102604]
1560214
1560301
+
Ser
TGA
-
¡û
>W1510092959
CEFO01000001
Gammaproteobacteria
Enterobacter ludwigii EnVs6 [CEFO]
405753
405666
-
Ser
TGA
[ENA]
¡û
>W1510093159
CEFQ01000010
Gammaproteobacteria
Enterobacter ludwigii EnVs2 [CEFQ]
604746
604833
+
Ser
TGA
[ENA]
¡û
>W1510093240
CEFR01000091
Gammaproteobacteria
Enterobacter ludwigii LecVs2 [CEFR]
612439
612526
+
Ser
TGA
[ENA]
¡û
>C241230388
CP117199
Gammaproteobacteria
Pantoea sp. SS70 [CP117199]
1529798
1529885
+
Ser
TGA
-
¡û
>WENV11100687
AEWW01013356
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
59193
59106
-
Ser
TGA
[ENA]
¡û
>WENV11100688
AEWW01013356
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
59070
58983
-
Ser
TGA
[ENA]
¡û
>W1511356682
JRUP01000002
Gammaproteobacteria
Enterobacter cancerogenus M004 [JRUP]
69941
69854
-
Ser
TGA
[ENA]
¡û
>W1511402148
JTJJ01000022
Gammaproteobacteria
Pantoea rodasii ND03 [JTJJ]
49263
49176
-
Ser
TGA
[ENA]
¡û
>W1511547695
JZRD01000033
Gammaproteobacteria
Pantoea sp. SM3 [JZRD]
64692
64605
-
Ser
TGA
[ENA]
¡û
>W1511547912
JZRH01000002
Gammaproteobacteria
Pantoea sp. BL1 [JZRH]
44263
44176
-
Ser
TGA
[ENA]
¡û
>W1511547913
JZRH01000002
Gammaproteobacteria
Pantoea sp. BL1 [JZRH]
44140
44053
-
Ser
TGA
[ENA]
¡û
>W1511699701
LGIS01000012
Gammaproteobacteria
Pantoea sp. RIT-PI-b [LGIS]
658550
658637
+
Ser
TGA
[ENA]
¡û
>C161035399
CP011427
Gammaproteobacteria
Pantoea vagans ND02 [CP011427]
2515780
2515693
-
Ser
TGA
[Ensembl]
¡û
>C161035400
CP011427
Gammaproteobacteria
Pantoea vagans ND02 [CP011427]
2515658
2515571
-
Ser
TGA
[Ensembl]
¡û
>W121084795
AKIT01000003
Gammaproteobacteria
Pantoea sp. YR343 [AKIT]
1783
1696
-
Ser
TGA
[ENA]
¡û
>W121084796
AKIT01000003
Gammaproteobacteria
Pantoea sp. YR343 [AKIT]
1659
1572
-
Ser
TGA
[ENA]
¡û
>W121084848
AKIU01000028
Gammaproteobacteria
Pantoea sp. GM01 [AKIU]
44020
43933
-
Ser
TGA
[ENA]
¡û
>W1610053178
BBOC01000005
Gammaproteobacteria
Type-D symbiont of Plautia stali [BBOC]
102220
102307
+
Ser
TGA
[ENA]
¡û
>W1610053262
BBOD01000005
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
122468
122381
-
Ser
TGA
[ENA]
¡û
>W1610053263
BBOD01000005
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
122346
122259
-
Ser
TGA
[ENA]
¡û
>W1710049556
BBOC01000005
Gammaproteobacteria
Type-D symbiont of Plautia stali [BBOC]
102220
102307
+
Ser
TGA
[ENA]
¡û
>W1710049640
BBOD01000005
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
122468
122381
-
Ser
TGA
[ENA]
¡û
>W1710049641
BBOD01000005
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
122346
122259
-
Ser
TGA
[ENA]
¡û
>W1710566652
FOSD01000001
Gammaproteobacteria
Pantoea symbiotica YR512 [FOSD]
517198
517111
-
Ser
TGA
[ENA]
¡û
>W1710566653
FOSD01000001
Gammaproteobacteria
Pantoea symbiotica YR512 [FOSD]
517074
516987
-
Ser
TGA
[ENA]
¡û
>W1710578687
FPBU01000001
Gammaproteobacteria
Pantoea sp. YR525 [FPBU]
517074
516987
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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