This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50137 (77 seq.)
>W1711090571
LTAV01000011
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
44493
44406
-
Ser
GGA
[ENA]
¡û
>W1711090662
LTAW01000007
Gammaproteobacteria
Marinomonas atlantica [LTAW]
208120
208207
+
Ser
GGA
[ENA]
¡û
>W1711090727
LTAX01000009
Gammaproteobacteria
Marinomonas gallaica [LTAX]
129740
129827
+
Ser
GGA
[ENA]
¡û
>W1712081267
NHNK01000001
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
184054
184141
+
Ser
GGA
[ENA]
¡û
>C012996
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
2478015
2478102
+
Ser
GGA
[Ensembl]
¡û
>w013326
AANE01000024
Gammaproteobacteria
Marinomonas sp. MED121 [AANE]
34223
34134
-
Ser
GGA
[ENA]
¡û
>WENV180042130
LNFX01000216
[LNFX] marine sediment metagenome; antarctic beach sand mud
27667
27580
-
Ser
GGA
[ENA]
¡û
>W141191429
AYOZ01000061
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
65349
65262
-
Ser
GGA
[ENA]
¡û
>W141284675
JAMB01000003
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
102154
102067
-
Ser
GGA
[ENA]
¡û
>WENV170210187
CEPV01148744
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
347
260
-
Ser
GGA
[ENA]
¡û
>WENV170780465
MAAB01001363
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
3135
3222
+
Ser
GGA
[ENA]
¡û
>C191039797
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
2008464
2008551
+
Ser
GGA
-
¡û
>W09106437
AAVH01000002
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
9848
9935
+
Ser
GGA
[ENA]
¡û
>W1910584812
JYBL01000002
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
104729
104816
+
Ser
GGA
[ENA]
¡û
>W1910914854
NHTT01000002
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
393358
393445
+
Ser
GGA
[ENA]
¡û
>W1810606204
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
541153
541240
+
Ser
GGA
[ENA]
¡û
>W1810625268
QHJF01000027
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
86874
86787
-
Ser
GGA
[ENA]
¡û
>W1810676245
QKLW01000001
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
963379
963466
+
Ser
GGA
[ENA]
¡û
>W1810679641
QKRA01000001
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
506726
506813
+
Ser
GGA
[ENA]
¡û
>W1810720333
QNRF01000005
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
297944
298031
+
Ser
GGA
[ENA]
¡û
>W1810721668
QNSE01000003
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
166812
166899
+
Ser
GGA
[ENA]
¡û
>W1810759744
QPJQ01000062
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
1258
1345
+
Ser
GGA
[ENA]
¡û
>W1810885333
QUNG01000002
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
71951
72038
+
Ser
GGA
[ENA]
¡û
>W2010584361
JABAEK010000001
Gammaproteobacteria
Marinomonas sp. M1K-6 [JABAEK]
405234
405321
+
Ser
GGA
[ENA]
¡û
>W2010764315
JYBL01000002
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
104729
104816
+
Ser
GGA
[ENA]
¡û
>W2010967714
NHTT01000002
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
393358
393445
+
Ser
GGA
[ENA]
¡û
>W2011222084
PTXN01000021
Gammaproteobacteria
Marinomonas sp. UCMA 3892 UCMA3892 [PTXN]
22814
22901
+
Ser
GGA
[ENA]
¡û
>W2011431073
RIZG01000006
Gammaproteobacteria
Marinomonas hwangdonensis HDW-15 [RIZG]
87984
87897
-
Ser
GGA
[ENA]
¡û
>W2011431096
RIZH01000003
Gammaproteobacteria
Marinomonas rhizomae IVIA-Po-145 [RIZH]
180440
180353
-
Ser
GGA
[ENA]
¡û
>W2011611884
SJSB01000010
Gammaproteobacteria
Marinomonas sp. JHZ-47 [SJSB]
72560
72473
-
Ser
GGA
[ENA]
¡û
>W2011611983
SJSC01000006
Gammaproteobacteria
Marinomonas sp. KMM3893 [SJSC]
140585
140498
-
Ser
GGA
[ENA]
¡û
>W2011648810
SNXC01000013
Gammaproteobacteria
Marinomonas balearica CECT 7378 [SNXC]
145204
145117
-
Ser
GGA
[ENA]
¡û
>W2011651380
SNZA01000001
Gammaproteobacteria
Marinomonas communis DSM 5604 [SNZA]
646459
646372
-
Ser
GGA
[ENA]
¡û
>W2012023242
VFRR01000001
Gammaproteobacteria
Marinomonas sp. HB171799 [VFRR]
43103
43190
+
Ser
GGA
[ENA]
¡û
>W2012132099
VSRV01000001
Gammaproteobacteria
Marinomonas sp. IMCC 4694 [VSRV]
1649579
1649666
+
Ser
GGA
[ENA]
¡û
>W2110030205
BMLJ01000006
Gammaproteobacteria
Marinomonas arctica CGMCC 1.6498 [BMLJ]
230607
230520
-
Ser
GGA
[ENA]
¡û
>W2110286886
JACYFC010000004
Gammaproteobacteria
Marinomonas colpomeniae SM2066 [JACYFC]
324607
324520
-
Ser
GGA
[ENA]
¡û
>W2110428851
JAEMNX010000011
Gammaproteobacteria
Marinomonas sp. C1424 [JAEMNX]
93558
93645
+
Ser
GGA
[ENA]
¡û
>W2110429559
JAEMUH010000002
Gammaproteobacteria
Marinomonas ostreistagni USM7 [JAEMUH]
40367
40280
-
Ser
GGA
[ENA]
¡û
>W2110429623
JAEMUI010000005
Gammaproteobacteria
Marinomonas spartinae USM8 [JAEMUI]
49268
49181
-
Ser
GGA
[ENA]
¡û
>W2110482889
JAFEKF010000001
Gammaproteobacteria
Marinomonas ostreistagni UST010306-043 [JAFEKF]
597052
597139
+
Ser
GGA
[ENA]
¡û
>W2110571069
JAGSSV010000046
Gammaproteobacteria
Marinomonas vulgaris A79 [JAGSSV]
2382
2469
+
Ser
GGA
[ENA]
¡û
>W2110617662
JAHLLW010000002
Gammaproteobacteria
Marinomonas sp. E165 [JAHLLW]
366310
366397
+
Ser
GGA
[ENA]
¡û
>C211142047
CP061081
Gammaproteobacteria
Marinomonas arctica BSI20414 [CP061081]
2226198
2226111
-
Ser
GGA
-
¡û
>C211155518
CP061941
Gammaproteobacteria
Marinomonas algicola SM1966 [CP061941]
2426201
2426114
-
Ser
GGA
-
¡û
>C211273554
CP070273
Gammaproteobacteria
Marinomonas foliarum JZW [CP070273]
87934
88021
+
Ser
GGA
-
¡û
>W2110716864
JAJATW010000001
Gammaproteobacteria
Marinomonas sp. E8 [JAJATW]
199256
199169
-
Ser
GGA
[ENA]
¡û
>C231056828
CP047694
Gammaproteobacteria
Marinomonas mediterranea MMB-3 (CPR1) [CP047694]
2270857
2270944
+
Ser
GGA
-
¡û
>C231056914
CP047695
Gammaproteobacteria
Marinomonas mediterranea MMB-2 (IVIA-Po-186) [CP047695]
2264480
2264567
+
Ser
GGA
-
¡û
>C231057000
CP047696
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP047696]
2304118
2304205
+
Ser
GGA
-
¡û
>C231129734
CP073013
Gammaproteobacteria
Marinomonas profundi M1K-6 [CP073013]
3460235
3460148
-
Ser
GGA
-
¡û
>C231130904
CP073343
Gammaproteobacteria
Marinomonas rhizomae MB12-11 [CP073343]
2121471
2121558
+
Ser
GGA
-
¡û
>C241010754
AP027271
Gammaproteobacteria
Marinomonas pontica 200518_36 [AP027271]
1687541
1687628
+
Ser
GGA
-
¡û
>C241166564
CP054301
Gammaproteobacteria
Marinomonas primoryensis MPKMM3633 [CP054301]
2100285
2100372
+
Ser
GGA
-
¡û
>C11114667
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
2304116
2304203
+
Ser
GGA
[Ensembl]
¡û
>C11115052
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
1903549
1903462
-
Ser
GGA
[Ensembl]
¡û
>W1510741330
CYHG01000005
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
2648
2561
-
Ser
GGA
[ENA]
¡û
>W1511518551
JXYC01000047
Gammaproteobacteria
Marinomonas sp. S3726 [JXYC]
118093
118180
+
Ser
GGA
[ENA]
¡û
>W1610503719
FLOB01000007
Gammaproteobacteria
Marinomonas spartinae [FLOB]
84521
84434
-
Ser
GGA
[ENA]
¡û
>W1610503784
FLOC01000011
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
45377
45290
-
Ser
GGA
[ENA]
¡û
>W1610504042
FLOE01000022
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
529134
529221
+
Ser
GGA
[ENA]
¡û
>W1610506671
FLRA01000023
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
223649
223736
+
Ser
GGA
[ENA]
¡û
>W1610506732
FLRB01000013
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
224209
224296
+
Ser
GGA
[ENA]
¡û
>W1610540055
JSEE01000012
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
34394
34481
+
Ser
GGA
[ENA]
¡û
>W1610540105
JSEN01000004
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
98250
98163
-
Ser
GGA
[ENA]
¡û
>W1610540240
JSEO01000015
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
98499
98412
-
Ser
GGA
[ENA]
¡û
>W1610632895
LIQF01000005
Gammaproteobacteria
Marinomonas fungiae [LIQF]
2648
2561
-
Ser
GGA
[ENA]
¡û
>W1610924811
LTAV01000011
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
44493
44406
-
Ser
GGA
[ENA]
¡û
>W1610924902
LTAW01000007
Gammaproteobacteria
Marinomonas atlantica [LTAW]
208120
208207
+
Ser
GGA
[ENA]
¡û
>W1610924967
LTAX01000009
Gammaproteobacteria
Marinomonas gallaica [LTAX]
129740
129827
+
Ser
GGA
[ENA]
¡û
>W1710496548
FLOB01000007
Gammaproteobacteria
Marinomonas spartinae [FLOB]
84521
84434
-
Ser
GGA
[ENA]
¡û
>W1710496613
FLOC01000011
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
45377
45290
-
Ser
GGA
[ENA]
¡û
>W1710583956
FQVF01000006
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
67434
67347
-
Ser
GGA
[ENA]
¡û
>W1710643076
JSEE01000012
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
34394
34481
+
Ser
GGA
[ENA]
¡û
>W1710643126
JSEN01000004
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
98250
98163
-
Ser
GGA
[ENA]
¡û
>W1710643261
JSEO01000015
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
98499
98412
-
Ser
GGA
[ENA]
¡û
>W1710767327
LIQF01000005
Gammaproteobacteria
Marinomonas fungiae [LIQF]
2648
2561
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK